miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 32766 0.75 0.227255
Target:  5'- aCCCGuggucucgggagcAGGGCGCGCcCGCGCcggccggcgacGCCCCCg -3'
miRNA:   3'- -GGGC-------------UCCUGCGCGuGUGCG-----------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 33183 0.7 0.485963
Target:  5'- --gGGGGGCGgGCACGagaaGcCGCCCCCa -3'
miRNA:   3'- gggCUCCUGCgCGUGUg---C-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 33511 0.67 0.617584
Target:  5'- -gCGAGGGCGguugaaucacaaCGCauGCACGCccucuGCCCCCg -3'
miRNA:   3'- ggGCUCCUGC------------GCG--UGUGCG-----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 33591 0.71 0.420176
Target:  5'- aCCCGAGG-CaUGCACcCGCACuuacgcccgugcccaCCCCCg -3'
miRNA:   3'- -GGGCUCCuGcGCGUGuGCGUG---------------GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 33723 0.73 0.325319
Target:  5'- aCCCGAGGcAUGCaacCGCACuCACCCCaCCc -3'
miRNA:   3'- -GGGCUCC-UGCGc--GUGUGcGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 34106 0.66 0.674497
Target:  5'- gCgUGGGGGCgguggGCGUACGgGCccgacccgcgccuGCCCCCCc -3'
miRNA:   3'- -GgGCUCCUG-----CGCGUGUgCG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 34507 0.77 0.195344
Target:  5'- uUCGAgGGGCGCGCucucucacacgagacACACGCaggcGCCCCCCc -3'
miRNA:   3'- gGGCU-CCUGCGCG---------------UGUGCG----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 35318 0.72 0.36007
Target:  5'- cUCCGGGcacGGCGCccgcaaccgcagaGCACucagcugGCGCGCCCCCCc -3'
miRNA:   3'- -GGGCUC---CUGCG-------------CGUG-------UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 35609 0.69 0.541162
Target:  5'- cUCCGGGGGCucCGCACucugcccggcuCGCcccguCCCCCCu -3'
miRNA:   3'- -GGGCUCCUGc-GCGUGu----------GCGu----GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 36643 0.78 0.163849
Target:  5'- -gCGGGGGCGCGCuuucccCGCGuCGCCCCUCg -3'
miRNA:   3'- ggGCUCCUGCGCGu-----GUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 38026 0.69 0.513259
Target:  5'- gCUGAauGGGCccGUGCAC-CGCagccGCCCCCCa -3'
miRNA:   3'- gGGCU--CCUG--CGCGUGuGCG----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 38475 0.67 0.636907
Target:  5'- uCCC----ACGCGCACGCcgGCAUCgCCCCg -3'
miRNA:   3'- -GGGcuccUGCGCGUGUG--CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 39792 0.67 0.660071
Target:  5'- uCCCGAGG-CGCGacCACACGCcgguggucgcgggugGCggaucgucggcUCCCCg -3'
miRNA:   3'- -GGGCUCCuGCGC--GUGUGCG---------------UG-----------GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 40319 0.66 0.685033
Target:  5'- cCCCGucGGGCGU-CAC-CGCccccGCCCCCg -3'
miRNA:   3'- -GGGCu-CCUGCGcGUGuGCG----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 42501 0.68 0.588688
Target:  5'- -gCGGGGACcgGUagGCACACGCGCagCCCg -3'
miRNA:   3'- ggGCUCCUG--CG--CGUGUGCGUGggGGG- -5'
5150 5' -61.9 NC_001798.1 + 43123 0.7 0.459377
Target:  5'- uUCCGGcGGGCGCGCgucccgcgucACGCGgGCCCagucguCCCg -3'
miRNA:   3'- -GGGCU-CCUGCGCG----------UGUGCgUGGG------GGG- -5'
5150 5' -61.9 NC_001798.1 + 43265 0.67 0.636907
Target:  5'- gCCGGGGGCGuCGUGCccUGCugCUCCg -3'
miRNA:   3'- gGGCUCCUGC-GCGUGu-GCGugGGGGg -5'
5150 5' -61.9 NC_001798.1 + 43332 0.69 0.531801
Target:  5'- uCUgGGGGGCG-GCAgUGC-CGCCCCCCg -3'
miRNA:   3'- -GGgCUCCUGCgCGU-GUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 43496 0.7 0.476128
Target:  5'- gCCGGGGcauacgugcGCGCGCGCAgguaggcggcggcCGCGUCUCCCg -3'
miRNA:   3'- gGGCUCC---------UGCGCGUGU-------------GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 44161 0.72 0.369153
Target:  5'- gCCCGGcGGuACGCccccaGCACGCGCGCCUCg- -3'
miRNA:   3'- -GGGCU-CC-UGCG-----CGUGUGCGUGGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.