miRNA display CGI


Results 121 - 140 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 44729 0.67 0.656216
Target:  5'- -gCGAGGAgGUGauaACGCACCCgUCg -3'
miRNA:   3'- ggGCUCCUgCGCgugUGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 45924 0.7 0.477018
Target:  5'- uCUCGggGGGugGCGguCGCGUccggaACCCCUCu -3'
miRNA:   3'- -GGGC--UCCugCGCguGUGCG-----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47057 0.67 0.655252
Target:  5'- aUCGGGGACGCGCaaugccgggGCGacaGCGCCggugugguguccgUCCCg -3'
miRNA:   3'- gGGCUCCUGCGCG---------UGUg--CGUGG-------------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 47284 0.66 0.694571
Target:  5'- gCCUGuucGGGGCGUGUcuguC-CGUugCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGCGu---GuGCGugGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47378 0.68 0.560045
Target:  5'- aCCCGcAGGGaGC-CACuccCGCGgCCCCCg -3'
miRNA:   3'- -GGGC-UCCUgCGcGUGu--GCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47832 0.75 0.238471
Target:  5'- cCCCGGcccCGCGCGCGCuccucCACCCCCCg -3'
miRNA:   3'- -GGGCUccuGCGCGUGUGc----GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47868 0.77 0.171881
Target:  5'- cCCCGuGGGCGCcggcggGCGCuCGCACgCCCCu -3'
miRNA:   3'- -GGGCuCCUGCG------CGUGuGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 48050 0.67 0.617584
Target:  5'- aCCCGcccaGGGACuggccaagaaGCuGCACuucaGCACCgCCCCa -3'
miRNA:   3'- -GGGC----UCCUG----------CG-CGUGug--CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 48095 0.67 0.617584
Target:  5'- aCCGAGccccACG-GCGC-CGUggACCCCCCg -3'
miRNA:   3'- gGGCUCc---UGCgCGUGuGCG--UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 48377 0.78 0.148791
Target:  5'- cCCCGcGGGGCGUGCcgccgcgaccGCACGgGCCCCCg -3'
miRNA:   3'- -GGGC-UCCUGCGCG----------UGUGCgUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 48776 0.73 0.332349
Target:  5'- cCUCGGGGACGC--ACG-GCACCCCCg -3'
miRNA:   3'- -GGGCUCCUGCGcgUGUgCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 48955 0.68 0.569555
Target:  5'- gUuuGcGGACGCGgACGggguuuCGCcaccGCCCCCCa -3'
miRNA:   3'- -GggCuCCUGCGCgUGU------GCG----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49270 0.76 0.202816
Target:  5'- --gGGGGAUGCGCACGuccccgaGCGCUCCCCg -3'
miRNA:   3'- gggCUCCUGCGCGUGUg------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49572 0.66 0.675457
Target:  5'- aCCgCGAGaccGCGCGcCugGCGCGCgUCCUg -3'
miRNA:   3'- -GG-GCUCc--UGCGC-GugUGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49867 0.66 0.685033
Target:  5'- aCCCG-GGGCGCcccuCACG-ACCCCgCCc -3'
miRNA:   3'- -GGGCuCCUGCGcgu-GUGCgUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 50101 0.67 0.646566
Target:  5'- gCCGGgcuGGugGCGC-CGCGCAugucguuuCUCUCCg -3'
miRNA:   3'- gGGCU---CCugCGCGuGUGCGU--------GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 50216 0.67 0.646566
Target:  5'- -gCGAGGAgGUGgAUAUGaCGCCCgCCg -3'
miRNA:   3'- ggGCUCCUgCGCgUGUGC-GUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 50399 0.71 0.408653
Target:  5'- --gGuAGGAUGUGCGaccgggcgGCGCGCCCCCCc -3'
miRNA:   3'- gggC-UCCUGCGCGUg-------UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 50713 0.67 0.665849
Target:  5'- gCCCGcGGGucuGCGUGgGgACGaggccCACCCCCCc -3'
miRNA:   3'- -GGGC-UCC---UGCGCgUgUGC-----GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 51157 0.74 0.2786
Target:  5'- cCCCGGGucccGACGCGCguccgaggcccggGCgGCgGCGCCCCCCc -3'
miRNA:   3'- -GGGCUC----CUGCGCG-------------UG-UG-CGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.