miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 134554 0.68 0.560045
Target:  5'- -aCGAGGAcCGCGCguuuuGCGCGCgaauacACCaCCCUg -3'
miRNA:   3'- ggGCUCCU-GCGCG-----UGUGCG------UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 134463 0.7 0.445517
Target:  5'- cCCCGGcgcgcgguuggcguGGGCGCGC-CugGCcgccauucgcgacaGCCCCCa -3'
miRNA:   3'- -GGGCU--------------CCUGCGCGuGugCG--------------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 134372 0.67 0.646566
Target:  5'- gCCCGccGGC-CGCuccuCGCGcCGCCCUCCu -3'
miRNA:   3'- -GGGCucCUGcGCGu---GUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 134160 0.69 0.512339
Target:  5'- cCCCGGGGccguCGCGgcCGCcCGCGCCgcgacggCCCCg -3'
miRNA:   3'- -GGGCUCCu---GCGC--GUGuGCGUGG-------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 134074 0.76 0.207611
Target:  5'- gCgGGGGAgGCGCGCGCGCGCUUCgCg -3'
miRNA:   3'- gGgCUCCUgCGCGUGUGCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 133899 0.69 0.494988
Target:  5'- gUCUGGGGcCGCGCucguucgauACACgGCAaCCCCCg -3'
miRNA:   3'- -GGGCUCCuGCGCG---------UGUG-CGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133757 0.8 0.113674
Target:  5'- gCCCGcgugGGGGCGCugcuuGCGCACGCACgCCUCCg -3'
miRNA:   3'- -GGGC----UCCUGCG-----CGUGUGCGUG-GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133446 0.72 0.376067
Target:  5'- gUCgGAGGACGCGguUaagcgcguggccgACGCccugagcggcuGCCCCCCg -3'
miRNA:   3'- -GGgCUCCUGCGCguG-------------UGCG-----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133347 0.81 0.105532
Target:  5'- cCCCGAGGACGUGCugGagcUGCugaaCCCCCa -3'
miRNA:   3'- -GGGCUCCUGCGCGugU---GCGug--GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133036 0.72 0.361573
Target:  5'- gCCGAGGugGuCGCGCucauGCGCGgCCUCa -3'
miRNA:   3'- gGGCUCCugC-GCGUG----UGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 132147 0.77 0.189005
Target:  5'- gCCGGGGGCcgGCGgGCgGgGCGCCCCCCc -3'
miRNA:   3'- gGGCUCCUG--CGCgUG-UgCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 131925 0.68 0.607934
Target:  5'- gCCgCGucGACGCGUugAUGCugCgCCUg -3'
miRNA:   3'- -GG-GCucCUGCGCGugUGCGugGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 130544 0.79 0.126682
Target:  5'- cCCCGAGGugggggcccaccaacACGCGCACGuagugacacaGCACCCCCUc -3'
miRNA:   3'- -GGGCUCC---------------UGCGCGUGUg---------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 130038 0.66 0.704062
Target:  5'- cCCCGcGGACcuugGCGCAUAC---CCCUCCa -3'
miRNA:   3'- -GGGCuCCUG----CGCGUGUGcguGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 129691 0.77 0.171881
Target:  5'- gCCGGGGccccaguaccgGCGCGCAU-CGgACCCCCCa -3'
miRNA:   3'- gGGCUCC-----------UGCGCGUGuGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 129332 0.67 0.656216
Target:  5'- cCUgGAGGACG-GC-CGCggaGCGCCCgCCg -3'
miRNA:   3'- -GGgCUCCUGCgCGuGUG---CGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 128968 0.68 0.588688
Target:  5'- gCCCgGAGGAgGCGCu--CGuCACCCaagaCCg -3'
miRNA:   3'- -GGG-CUCCUgCGCGuguGC-GUGGGg---GG- -5'
5150 5' -61.9 NC_001798.1 + 128831 0.67 0.646566
Target:  5'- cCCCGcGGACcccgGCGCcCcCGCGgCCUCCg -3'
miRNA:   3'- -GGGCuCCUG----CGCGuGuGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 128659 0.73 0.304897
Target:  5'- gCCGAGGAgaaCGUGCACGCGUGCggggUCCUCa -3'
miRNA:   3'- gGGCUCCU---GCGCGUGUGCGUG----GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 128290 0.73 0.298312
Target:  5'- cUCUGGcgccuGACGCGC-CGCGC-CCCCCCg -3'
miRNA:   3'- -GGGCUc----CUGCGCGuGUGCGuGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.