miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 128028 0.74 0.273075
Target:  5'- gCCGGGGG-GCGCACACGcCAUCgaCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUGUGC-GUGGg-GGG- -5'
5150 5' -61.9 NC_001798.1 + 127884 0.66 0.694571
Target:  5'- aCCGGGGGCcccGgGUucccAUugGCcccagaGCCCCCCa -3'
miRNA:   3'- gGGCUCCUG---CgCG----UGugCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 125738 0.68 0.607934
Target:  5'- gCCGA-GACGcCGC-CACGCGgCCCUg -3'
miRNA:   3'- gGGCUcCUGC-GCGuGUGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 125513 0.67 0.636907
Target:  5'- aUCCaaaaaaGGGACGCGCA-GCGCAUCgCCgCCg -3'
miRNA:   3'- -GGGc-----UCCUGCGCGUgUGCGUGG-GG-GG- -5'
5150 5' -61.9 NC_001798.1 + 125254 0.67 0.665849
Target:  5'- gUUGGGGcACgGCGUccuccgGCGCGCACUCCCg -3'
miRNA:   3'- gGGCUCC-UG-CGCG------UGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 124332 0.66 0.675457
Target:  5'- gCCG-GGACgGCGCGgaaaGCGuCAUCCgCCCg -3'
miRNA:   3'- gGGCuCCUG-CGCGUg---UGC-GUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 124255 0.69 0.504088
Target:  5'- cCCCGuGGACGCgguuauccugcgGCAgGCG-ACCCgCCg -3'
miRNA:   3'- -GGGCuCCUGCG------------CGUgUGCgUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 124117 0.69 0.522498
Target:  5'- uUCCGccaACGCGCugugGCGCGCCCCCg -3'
miRNA:   3'- -GGGCuccUGCGCGug--UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 124074 0.7 0.450687
Target:  5'- cCCCggGAGGAgGCgGCGCcUGCGCCCCg- -3'
miRNA:   3'- -GGG--CUCCUgCG-CGUGuGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 123433 0.76 0.198118
Target:  5'- aCCG-GGGCGCcccccccgaCGCGCGCGCCCCCg -3'
miRNA:   3'- gGGCuCCUGCGc--------GUGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 123253 0.66 0.691714
Target:  5'- gUCCGcuGACGCGUGCuuuUGUuccaccgcucacccACCCCCCc -3'
miRNA:   3'- -GGGCucCUGCGCGUGu--GCG--------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 122564 0.7 0.442089
Target:  5'- gCCGAGGugGCcuucguCGCGCGCAUCCagaUCg -3'
miRNA:   3'- gGGCUCCugCGc-----GUGUGCGUGGGg--GG- -5'
5150 5' -61.9 NC_001798.1 + 122509 0.7 0.477018
Target:  5'- gCUCGAGGGaccccUGCGcCACcCGCGCCCCg- -3'
miRNA:   3'- -GGGCUCCU-----GCGC-GUGuGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 122418 0.67 0.627243
Target:  5'- cCCUGAcGGAgGCcugugccgccgaGCGCGucgUGCGCCCCCa -3'
miRNA:   3'- -GGGCU-CCUgCG------------CGUGU---GCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 122363 0.75 0.227779
Target:  5'- -gCGuGGGGCGgGCgACGCGCccGCCCCCCg -3'
miRNA:   3'- ggGC-UCCUGCgCG-UGUGCG--UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 121968 0.7 0.441234
Target:  5'- aCCCGGuccGCGCGCgccccaaGCACGCGgCCUCCg -3'
miRNA:   3'- -GGGCUcc-UGCGCG-------UGUGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 121744 0.7 0.450687
Target:  5'- cCCUGGGGAUGgGgaaaGCG-GCACCCCCa -3'
miRNA:   3'- -GGGCUCCUGCgCg---UGUgCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 121638 0.72 0.354102
Target:  5'- gCCGAcGGCGCGCGCcucAUGCGCCUCUg -3'
miRNA:   3'- gGGCUcCUGCGCGUG---UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 121564 0.66 0.694571
Target:  5'- gCCCGuGGGCgaccuGUGCcCGCGUGCUCCUg -3'
miRNA:   3'- -GGGCuCCUG-----CGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 121079 1.13 0.000583
Target:  5'- cCCCGAGGACGCGCACACGCACCCCCCa -3'
miRNA:   3'- -GGGCUCCUGCGCGUGUGCGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.