miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 120611 0.67 0.669695
Target:  5'- cCCCGccgacuuuguuAGGACGgGCcgguCGuCGCcggucucgcgggccuGCCCCCCg -3'
miRNA:   3'- -GGGC-----------UCCUGCgCGu---GU-GCG---------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 118387 0.67 0.665849
Target:  5'- aCCUGGGGcuccUGCGCACGacaG-ACCuCCCCg -3'
miRNA:   3'- -GGGCUCCu---GCGCGUGUg--CgUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 116987 0.66 0.684077
Target:  5'- cCCCGGcccuGCGCGaccugGCGCGCGacgucccccugguCCCCCCg -3'
miRNA:   3'- -GGGCUcc--UGCGCg----UGUGCGU-------------GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 116842 0.71 0.433584
Target:  5'- uUCGAcgGGGCGCuGCACGCcgGCgugcugcucaugGCCCCCCa -3'
miRNA:   3'- gGGCU--CCUGCG-CGUGUG--CG------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 115288 0.66 0.675457
Target:  5'- aCCCGGccauGGAgcgcuuCGcCGCGCACGCcggggaccugguGCCCgCCCc -3'
miRNA:   3'- -GGGCU----CCU------GC-GCGUGUGCG------------UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 115099 0.7 0.450687
Target:  5'- aCCGGGaGACGCuGgAUGaacucgaaaGCGCCCCCCa -3'
miRNA:   3'- gGGCUC-CUGCG-CgUGUg--------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112528 0.68 0.569555
Target:  5'- aCCCGuGGGuuGCucuCGCGCGUGCCgCCCg -3'
miRNA:   3'- -GGGC-UCCugCGc--GUGUGCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 112313 0.71 0.408653
Target:  5'- uCCCGAGGcCGCcCuacggaauaaACGgACCCCCCg -3'
miRNA:   3'- -GGGCUCCuGCGcGug--------UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112199 0.66 0.722874
Target:  5'- uCCCGcAGGcCGCGCugGCGgAgCUCgCu -3'
miRNA:   3'- -GGGC-UCCuGCGCGugUGCgUgGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 112002 0.77 0.180263
Target:  5'- cCCUGucucGcGCGCGCACGCGCACCCCg- -3'
miRNA:   3'- -GGGCu---CcUGCGCGUGUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 111722 0.67 0.656216
Target:  5'- gCUGAcGGugGCcCGCuuggccccCGCGCCCCCg -3'
miRNA:   3'- gGGCU-CCugCGcGUGu-------GCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 111430 0.66 0.722874
Target:  5'- cCCCGAGaaACGC-C-CGCGgAgCCCCCa -3'
miRNA:   3'- -GGGCUCc-UGCGcGuGUGCgUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 111065 0.7 0.485065
Target:  5'- gCCGAGGuacaugACGUGCucgggcgAgACGgACCCCCCc -3'
miRNA:   3'- gGGCUCC------UGCGCG-------UgUGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 110896 0.67 0.636907
Target:  5'- aCCCGGcGGuuCGCGUGCGgccaGcCGCCCCCg -3'
miRNA:   3'- -GGGCU-CCu-GCGCGUGUg---C-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 109896 0.7 0.449823
Target:  5'- gCCGAGGGCGgguucauccuggaCGCGCugGCcaugGCCaCCCg -3'
miRNA:   3'- gGGCUCCUGC-------------GCGUGugCG----UGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 109694 0.71 0.416038
Target:  5'- uCCUGGcGGGCGCGCccucggccgagcaGCgggaACGCGCCCgCCg -3'
miRNA:   3'- -GGGCU-CCUGCGCG-------------UG----UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 109609 0.67 0.617584
Target:  5'- gCCGAGuuucucGGCGgcCGCGCGCuaACCgCCCCg -3'
miRNA:   3'- gGGCUC------CUGC--GCGUGUGcgUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 109205 0.7 0.468155
Target:  5'- aCCCGGgcuccggcacGGACGCGCGuccgucccuguuCugGCGCCUCgCg -3'
miRNA:   3'- -GGGCU----------CCUGCGCGU------------GugCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 109073 0.67 0.664886
Target:  5'- uCCUGGGGGCcccgacgcccGCcgacaacggcucgGCGCugGaCGCCCUCCg -3'
miRNA:   3'- -GGGCUCCUG----------CG-------------CGUGugC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 108660 0.71 0.392537
Target:  5'- aCCCGGacGGcCGaCGCaACGCGcCGCCCCCg -3'
miRNA:   3'- -GGGCU--CCuGC-GCG-UGUGC-GUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.