miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 40319 0.66 0.685033
Target:  5'- cCCCGucGGGCGU-CAC-CGCccccGCCCCCg -3'
miRNA:   3'- -GGGCu-CCUGCGcGUGuGCG----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 5333 0.66 0.685033
Target:  5'- cCCCcAGGugGaacCGCAUuauGCGCGgCCCCg -3'
miRNA:   3'- -GGGcUCCugC---GCGUG---UGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 148640 0.66 0.685033
Target:  5'- cCCCGAGccaGGCGCccucccacuccuGCcCAC-CACCCCCa -3'
miRNA:   3'- -GGGCUC---CUGCG------------CGuGUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 28342 0.66 0.685033
Target:  5'- gCCUGAGccUGCGCcgGCG-GCgGCCCCCCg -3'
miRNA:   3'- -GGGCUCcuGCGCG--UGUgCG-UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 1310 0.66 0.685033
Target:  5'- gCUCGAGcaGCGCcCGCGCGCAgaaCUCCCg -3'
miRNA:   3'- -GGGCUCc-UGCGcGUGUGCGUg--GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 116987 0.66 0.684077
Target:  5'- cCCCGGcccuGCGCGaccugGCGCGCGacgucccccugguCCCCCCg -3'
miRNA:   3'- -GGGCUcc--UGCGCg----UGUGCGU-------------GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 89308 0.66 0.684077
Target:  5'- cCCCGGucuCGCGCGCGaccuccuCGCGCUcguCCCCg -3'
miRNA:   3'- -GGGCUccuGCGCGUGU-------GCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 81663 0.66 0.685033
Target:  5'- cCCCGcGGAUGC-CGCGCuuccUCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGcGUGUGcgu-GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 123253 0.66 0.691714
Target:  5'- gUCCGcuGACGCGUGCuuuUGUuccaccgcucacccACCCCCCc -3'
miRNA:   3'- -GGGCucCUGCGCGUGu--GCG--------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 32377 0.66 0.694571
Target:  5'- gCCCGGGGcccgcgacccgGCGCccggccuCACGCGCuACCUgCCCa -3'
miRNA:   3'- -GGGCUCC-----------UGCGc------GUGUGCG-UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 78865 0.66 0.703115
Target:  5'- gCCUGGGGGCGCucuuugauacucgGCGcCGCGUcgacGCCCUgCg -3'
miRNA:   3'- -GGGCUCCUGCG-------------CGU-GUGCG----UGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 84398 0.66 0.703115
Target:  5'- uCUCGAGGGCGgGUugGaugGCgaguaggggcccgACUCCCCa -3'
miRNA:   3'- -GGGCUCCUGCgCGugUg--CG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148843 0.66 0.70122
Target:  5'- cCUCGGGGGugggggcggcuucuCGUGC-C-CGC-CCCCCCu -3'
miRNA:   3'- -GGGCUCCU--------------GCGCGuGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 74768 0.66 0.698373
Target:  5'- gCCCc-GGACGcCGCggccucggguccaccGCACGcCGCCCCgCCc -3'
miRNA:   3'- -GGGcuCCUGC-GCG---------------UGUGC-GUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 70089 0.66 0.694571
Target:  5'- gCCGGucgccaugucGGACaGCGCGCuccaggucccgGCGCccgccggcaugACCCCCCc -3'
miRNA:   3'- gGGCU----------CCUG-CGCGUG-----------UGCG-----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 21843 0.66 0.694571
Target:  5'- cCCCGggcAGGGCGCcaGUGCuCGCACUuugCCCUa -3'
miRNA:   3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 2604 0.66 0.694571
Target:  5'- uUCGGGGG-GCGCGgG-GCGCCgCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUgUgCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 127884 0.66 0.694571
Target:  5'- aCCGGGGGCcccGgGUucccAUugGCcccagaGCCCCCCa -3'
miRNA:   3'- gGGCUCCUG---CgCG----UGugCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 121564 0.66 0.694571
Target:  5'- gCCCGuGGGCgaccuGUGCcCGCGUGCUCCUg -3'
miRNA:   3'- -GGGCuCCUG-----CGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 47284 0.66 0.694571
Target:  5'- gCCUGuucGGGGCGUGUcuguC-CGUugCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGCGu---GuGCGugGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.