miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 115288 0.66 0.675457
Target:  5'- aCCCGGccauGGAgcgcuuCGcCGCGCACGCcggggaccugguGCCCgCCCc -3'
miRNA:   3'- -GGGCU----CCU------GC-GCGUGUGCG------------UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 66327 0.66 0.675457
Target:  5'- uCCCGGguacGGAUGCGCAgGUGgACcagaaCCCCCa -3'
miRNA:   3'- -GGGCU----CCUGCGCGUgUGCgUG-----GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 56923 0.66 0.675457
Target:  5'- gCCCGGguaguagguggcGGcCGUGCACGuCGCcuuaaacggcugGCCCUCCa -3'
miRNA:   3'- -GGGCU------------CCuGCGCGUGU-GCG------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49572 0.66 0.675457
Target:  5'- aCCgCGAGaccGCGCGcCugGCGCGCgUCCUg -3'
miRNA:   3'- -GG-GCUCc--UGCGC-GugUGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 5400 0.66 0.675457
Target:  5'- gCCCGuuGGuCGCGC-CGC-CGCCgCUCCg -3'
miRNA:   3'- -GGGCu-CCuGCGCGuGUGcGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 28342 0.66 0.685033
Target:  5'- gCCUGAGccUGCGCcgGCG-GCgGCCCCCCg -3'
miRNA:   3'- -GGGCUCcuGCGCG--UGUgCG-UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148640 0.66 0.685033
Target:  5'- cCCCGAGccaGGCGCccucccacuccuGCcCAC-CACCCCCa -3'
miRNA:   3'- -GGGCUC---CUGCG------------CGuGUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 21843 0.66 0.694571
Target:  5'- cCCCGggcAGGGCGCcaGUGCuCGCACUuugCCCUa -3'
miRNA:   3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 2604 0.66 0.694571
Target:  5'- uUCGGGGG-GCGCGgG-GCGCCgCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUgUgCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 127884 0.66 0.694571
Target:  5'- aCCGGGGGCcccGgGUucccAUugGCcccagaGCCCCCCa -3'
miRNA:   3'- gGGCUCCUG---CgCG----UGugCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 121564 0.66 0.694571
Target:  5'- gCCCGuGGGCgaccuGUGCcCGCGUGCUCCUg -3'
miRNA:   3'- -GGGCuCCUG-----CGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 47284 0.66 0.694571
Target:  5'- gCCUGuucGGGGCGUGUcuguC-CGUugCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGCGu---GuGCGugGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 32377 0.66 0.694571
Target:  5'- gCCCGGGGcccgcgacccgGCGCccggccuCACGCGCuACCUgCCCa -3'
miRNA:   3'- -GGGCUCC-----------UGCGc------GUGUGCG-UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 123253 0.66 0.691714
Target:  5'- gUCCGcuGACGCGUGCuuuUGUuccaccgcucacccACCCCCCc -3'
miRNA:   3'- -GGGCucCUGCGCGUGu--GCG--------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 81663 0.66 0.685033
Target:  5'- cCCCGcGGAUGC-CGCGCuuccUCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGcGUGUGcgu-GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49867 0.66 0.685033
Target:  5'- aCCCG-GGGCGCcccuCACG-ACCCCgCCc -3'
miRNA:   3'- -GGGCuCCUGCGcgu-GUGCgUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 144208 0.66 0.685033
Target:  5'- uCCgCGAGGAgGCGCGCGguuaggggguuCGCGagCUCCg -3'
miRNA:   3'- -GG-GCUCCUgCGCGUGU-----------GCGUggGGGG- -5'
5150 5' -61.9 NC_001798.1 + 52694 0.66 0.685033
Target:  5'- cCCUGu--ACGCGCGgAC-CACCCCCg -3'
miRNA:   3'- -GGGCuccUGCGCGUgUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 40319 0.66 0.685033
Target:  5'- cCCCGucGGGCGU-CAC-CGCccccGCCCCCg -3'
miRNA:   3'- -GGGCu-CCUGCGcGUGuGCG----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 5333 0.66 0.685033
Target:  5'- cCCCcAGGugGaacCGCAUuauGCGCGgCCCCg -3'
miRNA:   3'- -GGGcUCCugC---GCGUG---UGCGUgGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.