miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 85833 0.66 0.722874
Target:  5'- -gCGGGGGCGgGCGggggcucgggaACGCaACCCUCCc -3'
miRNA:   3'- ggGCUCCUGCgCGUg----------UGCG-UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112199 0.66 0.722874
Target:  5'- uCCCGcAGGcCGCGCugGCGgAgCUCgCu -3'
miRNA:   3'- -GGGC-UCCuGCGCGugUGCgUgGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 106585 0.66 0.722874
Target:  5'- aUCCu-GGugGCGUugAacuccCGCACCUCUCg -3'
miRNA:   3'- -GGGcuCCugCGCGugU-----GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 111430 0.66 0.722874
Target:  5'- cCCCGAGaaACGC-C-CGCGgAgCCCCCa -3'
miRNA:   3'- -GGGCUCc-UGCGcGuGUGCgUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150344 0.66 0.722874
Target:  5'- aCCG-GGGCGCGCgguGCGCGUCCaCCg -3'
miRNA:   3'- gGGCuCCUGCGCGug-UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 3564 0.66 0.713499
Target:  5'- aCCCcAGGugGgGCACGgccCGCGCCaCgCUg -3'
miRNA:   3'- -GGGcUCCugCgCGUGU---GCGUGG-GgGG- -5'
5150 5' -61.9 NC_001798.1 + 1986 0.66 0.713499
Target:  5'- gUCGGGGGCGCGguCcaguUGC-CCgCCCa -3'
miRNA:   3'- gGGCUCCUGCGCguGu---GCGuGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 148843 0.66 0.70122
Target:  5'- cCUCGGGGGugggggcggcuucuCGUGC-C-CGC-CCCCCCu -3'
miRNA:   3'- -GGGCUCCU--------------GCGCGuGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 84398 0.66 0.703115
Target:  5'- uCUCGAGGGCGgGUugGaugGCgaguaggggcccgACUCCCCa -3'
miRNA:   3'- -GGGCUCCUGCgCGugUg--CG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 78865 0.66 0.703115
Target:  5'- gCCUGGGGGCGCucuuugauacucgGCGcCGCGUcgacGCCCUgCg -3'
miRNA:   3'- -GGGCUCCUGCG-------------CGU-GUGCG----UGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 9433 0.66 0.704062
Target:  5'- uCCgGAGGGuccUGC-CACAgggacccguCGCGCUCCCCc -3'
miRNA:   3'- -GGgCUCCU---GCGcGUGU---------GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 23956 0.66 0.704062
Target:  5'- gCUGGGcGACGCgGCGCAgcaGUACgCCCUg -3'
miRNA:   3'- gGGCUC-CUGCG-CGUGUg--CGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 149304 0.66 0.704062
Target:  5'- aCCgGAGGcCGUGgAaguccaGCGCGCCCaCCa -3'
miRNA:   3'- -GGgCUCCuGCGCgUg-----UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 92566 0.66 0.704062
Target:  5'- gCCCGcauuuuGGcuuCGCGgACuACGCGCCCCg- -3'
miRNA:   3'- -GGGCu-----CCu--GCGCgUG-UGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 142108 0.66 0.704062
Target:  5'- aCCCcAGGGCGuCGCuaacgaGCGCGCUgCCg -3'
miRNA:   3'- -GGGcUCCUGC-GCGug----UGCGUGGgGGg -5'
5150 5' -61.9 NC_001798.1 + 148100 0.66 0.704062
Target:  5'- gCCGcuagggaaagguAGGcACGCGCGCGgugugucgacuUGCAUgCCCCg -3'
miRNA:   3'- gGGC------------UCC-UGCGCGUGU-----------GCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 130038 0.66 0.704062
Target:  5'- cCCCGcGGACcuugGCGCAUAC---CCCUCCa -3'
miRNA:   3'- -GGGCuCCUG----CGCGUGUGcguGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 23888 0.66 0.707844
Target:  5'- gCCCGAGGcggaggagGCGCGgGCccgguucgaggccucGgGCGCCCCg- -3'
miRNA:   3'- -GGGCUCC--------UGCGCgUG---------------UgCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 137433 0.66 0.712558
Target:  5'- aCCG-GGAcccgcccCGCGgGgACGCGCUCgCCCg -3'
miRNA:   3'- gGGCuCCU-------GCGCgUgUGCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 360 0.66 0.713499
Target:  5'- aCCCGcccGCcCGCACACGguUCCCCg -3'
miRNA:   3'- -GGGCuccUGcGCGUGUGCguGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.