Results 81 - 100 of 389 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 40319 | 0.66 | 0.685033 |
Target: 5'- cCCCGucGGGCGU-CAC-CGCccccGCCCCCg -3' miRNA: 3'- -GGGCu-CCUGCGcGUGuGCG----UGGGGGg -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 5333 | 0.66 | 0.685033 |
Target: 5'- cCCCcAGGugGaacCGCAUuauGCGCGgCCCCg -3' miRNA: 3'- -GGGcUCCugC---GCGUG---UGCGUgGGGGg -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 148640 | 0.66 | 0.685033 |
Target: 5'- cCCCGAGccaGGCGCccucccacuccuGCcCAC-CACCCCCa -3' miRNA: 3'- -GGGCUC---CUGCG------------CGuGUGcGUGGGGGg -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 28342 | 0.66 | 0.685033 |
Target: 5'- gCCUGAGccUGCGCcgGCG-GCgGCCCCCCg -3' miRNA: 3'- -GGGCUCcuGCGCG--UGUgCG-UGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 1310 | 0.66 | 0.685033 |
Target: 5'- gCUCGAGcaGCGCcCGCGCGCAgaaCUCCCg -3' miRNA: 3'- -GGGCUCc-UGCGcGUGUGCGUg--GGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 116987 | 0.66 | 0.684077 |
Target: 5'- cCCCGGcccuGCGCGaccugGCGCGCGacgucccccugguCCCCCCg -3' miRNA: 3'- -GGGCUcc--UGCGCg----UGUGCGU-------------GGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 89308 | 0.66 | 0.684077 |
Target: 5'- cCCCGGucuCGCGCGCGaccuccuCGCGCUcguCCCCg -3' miRNA: 3'- -GGGCUccuGCGCGUGU-------GCGUGG---GGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 81663 | 0.66 | 0.685033 |
Target: 5'- cCCCGcGGAUGC-CGCGCuuccUCCCCCg -3' miRNA: 3'- -GGGCuCCUGCGcGUGUGcgu-GGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 123253 | 0.66 | 0.691714 |
Target: 5'- gUCCGcuGACGCGUGCuuuUGUuccaccgcucacccACCCCCCc -3' miRNA: 3'- -GGGCucCUGCGCGUGu--GCG--------------UGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 32377 | 0.66 | 0.694571 |
Target: 5'- gCCCGGGGcccgcgacccgGCGCccggccuCACGCGCuACCUgCCCa -3' miRNA: 3'- -GGGCUCC-----------UGCGc------GUGUGCG-UGGG-GGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 78865 | 0.66 | 0.703115 |
Target: 5'- gCCUGGGGGCGCucuuugauacucgGCGcCGCGUcgacGCCCUgCg -3' miRNA: 3'- -GGGCUCCUGCG-------------CGU-GUGCG----UGGGGgG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 84398 | 0.66 | 0.703115 |
Target: 5'- uCUCGAGGGCGgGUugGaugGCgaguaggggcccgACUCCCCa -3' miRNA: 3'- -GGGCUCCUGCgCGugUg--CG-------------UGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 148843 | 0.66 | 0.70122 |
Target: 5'- cCUCGGGGGugggggcggcuucuCGUGC-C-CGC-CCCCCCu -3' miRNA: 3'- -GGGCUCCU--------------GCGCGuGuGCGuGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 74768 | 0.66 | 0.698373 |
Target: 5'- gCCCc-GGACGcCGCggccucggguccaccGCACGcCGCCCCgCCc -3' miRNA: 3'- -GGGcuCCUGC-GCG---------------UGUGC-GUGGGG-GG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 70089 | 0.66 | 0.694571 |
Target: 5'- gCCGGucgccaugucGGACaGCGCGCuccaggucccgGCGCccgccggcaugACCCCCCc -3' miRNA: 3'- gGGCU----------CCUG-CGCGUG-----------UGCG-----------UGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 21843 | 0.66 | 0.694571 |
Target: 5'- cCCCGggcAGGGCGCcaGUGCuCGCACUuugCCCUa -3' miRNA: 3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 2604 | 0.66 | 0.694571 |
Target: 5'- uUCGGGGG-GCGCGgG-GCGCCgCCCg -3' miRNA: 3'- gGGCUCCUgCGCGUgUgCGUGGgGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 127884 | 0.66 | 0.694571 |
Target: 5'- aCCGGGGGCcccGgGUucccAUugGCcccagaGCCCCCCa -3' miRNA: 3'- gGGCUCCUG---CgCG----UGugCG------UGGGGGG- -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 121564 | 0.66 | 0.694571 |
Target: 5'- gCCCGuGGGCgaccuGUGCcCGCGUGCUCCUg -3' miRNA: 3'- -GGGCuCCUG-----CGCGuGUGCGUGGGGGg -5' |
|||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 47284 | 0.66 | 0.694571 |
Target: 5'- gCCUGuucGGGGCGUGUcuguC-CGUugCCCCCc -3' miRNA: 3'- -GGGC---UCCUGCGCGu---GuGCGugGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home