miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 3' -62.1 NC_001798.1 + 178 0.67 0.58712
Target:  5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3'
miRNA:   3'- aGCGCCCgGACGG-GGGGCuaCUagag -5'
5151 3' -62.1 NC_001798.1 + 2449 0.67 0.567647
Target:  5'- -gGCGGcGCCaGCCgCCCUGcgGGUCg- -3'
miRNA:   3'- agCGCC-CGGaCGG-GGGGCuaCUAGag -5'
5151 3' -62.1 NC_001798.1 + 6947 0.72 0.306417
Target:  5'- aUCGCGuGCUgGCCCCuuGAUacGAUCUCg -3'
miRNA:   3'- -AGCGCcCGGaCGGGGggCUA--CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 7481 0.68 0.491841
Target:  5'- cCGCGGGCUUGCCUagCCCGGUcccCUa -3'
miRNA:   3'- aGCGCCCGGACGGG--GGGCUAcuaGAg -5'
5151 3' -62.1 NC_001798.1 + 9154 0.67 0.548341
Target:  5'- gCGCGGcGCC-GCCCgCgCCGGggggcagGGUCUCu -3'
miRNA:   3'- aGCGCC-CGGaCGGG-G-GGCUa------CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 11638 0.67 0.585167
Target:  5'- gCGCGGGCguccCUGUgUCCCCGGgggcgggggucgGGUCUCg -3'
miRNA:   3'- aGCGCCCG----GACG-GGGGGCUa-----------CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 13084 0.69 0.482679
Target:  5'- gCGCGGGCCcggUGCUCCagGAuaaauugugUGAUCUCc -3'
miRNA:   3'- aGCGCCCGG---ACGGGGggCU---------ACUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 24137 0.68 0.529246
Target:  5'- gCGCGGGCCgUGCCCCaCCuggGGUa-- -3'
miRNA:   3'- aGCGCCCGG-ACGGGG-GGcuaCUAgag -5'
5151 3' -62.1 NC_001798.1 + 25099 0.66 0.626378
Target:  5'- -gGCGGcGCCccgcGCCCCCCGAaGAa--- -3'
miRNA:   3'- agCGCC-CGGa---CGGGGGGCUaCUagag -5'
5151 3' -62.1 NC_001798.1 + 25598 0.72 0.297026
Target:  5'- cCGCGGGCCgcgccgggggcggGCCCCCCccggaGUGGUC-Cg -3'
miRNA:   3'- aGCGCCCGGa------------CGGGGGGc----UACUAGaG- -5'
5151 3' -62.1 NC_001798.1 + 25713 0.67 0.58712
Target:  5'- -gGCGGGCaacuggaccgGCgCCCCCGAc-GUCUCg -3'
miRNA:   3'- agCGCCCGga--------CG-GGGGGCUacUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 25874 0.67 0.567647
Target:  5'- cCGCGGaCUgGCCCgCCGAcgggcccgUGGUCUCg -3'
miRNA:   3'- aGCGCCcGGaCGGGgGGCU--------ACUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 26458 0.69 0.446894
Target:  5'- aCGCGGGCCcGCCCCCgcaGAUacgCUg -3'
miRNA:   3'- aGCGCCCGGaCGGGGGg--CUAcuaGAg -5'
5151 3' -62.1 NC_001798.1 + 28820 0.67 0.577366
Target:  5'- cCGCGGGCCcggGCCgUCgGgcGGUCUa -3'
miRNA:   3'- aGCGCCCGGa--CGGgGGgCuaCUAGAg -5'
5151 3' -62.1 NC_001798.1 + 29990 0.72 0.306417
Target:  5'- cCGUGGGCCgugcgccGCCCCCCGAcc--CUCu -3'
miRNA:   3'- aGCGCCCGGa------CGGGGGGCUacuaGAG- -5'
5151 3' -62.1 NC_001798.1 + 32064 0.7 0.404326
Target:  5'- cCGCGGGCgCcGCgCCCCCGucgGcGUCUCc -3'
miRNA:   3'- aGCGCCCG-GaCG-GGGGGCua-C-UAGAG- -5'
5151 3' -62.1 NC_001798.1 + 32570 0.69 0.482679
Target:  5'- cUGCGGGCCgcgGCCCCCgCG-UGGa--- -3'
miRNA:   3'- aGCGCCCGGa--CGGGGG-GCuACUagag -5'
5151 3' -62.1 NC_001798.1 + 36396 0.66 0.645074
Target:  5'- gCGCGGcGCCgggGCCCCCCugccgggcggggcGGUGGg--- -3'
miRNA:   3'- aGCGCC-CGGa--CGGGGGG-------------CUACUagag -5'
5151 3' -62.1 NC_001798.1 + 38426 0.67 0.577366
Target:  5'- -aGCGGGCCgggccgggGCCCCacauuuauCCGGUGgGUCaUCg -3'
miRNA:   3'- agCGCCCGGa-------CGGGG--------GGCUAC-UAG-AG- -5'
5151 3' -62.1 NC_001798.1 + 45520 0.72 0.299686
Target:  5'- uUCGCcccGGGCCcgUGCCCCCCGcgGAc--- -3'
miRNA:   3'- -AGCG---CCCGG--ACGGGGGGCuaCUagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.