miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 3' -62.1 NC_001798.1 + 25874 0.67 0.567647
Target:  5'- cCGCGGaCUgGCCCgCCGAcgggcccgUGGUCUCg -3'
miRNA:   3'- aGCGCCcGGaCGGGgGGCU--------ACUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 112255 0.67 0.557971
Target:  5'- uUUG-GGGCCUGUCCCCCGGa------ -3'
miRNA:   3'- -AGCgCCCGGACGGGGGGCUacuagag -5'
5151 3' -62.1 NC_001798.1 + 9154 0.67 0.548341
Target:  5'- gCGCGGcGCC-GCCCgCgCCGGggggcagGGUCUCu -3'
miRNA:   3'- aGCGCC-CGGaCGGG-G-GGCUa------CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 90083 0.67 0.548341
Target:  5'- aCGgGGGCCggcagGCCCCUgGAggcgaGAUCg- -3'
miRNA:   3'- aGCgCCCGGa----CGGGGGgCUa----CUAGag -5'
5151 3' -62.1 NC_001798.1 + 82213 0.68 0.538765
Target:  5'- cUC-CGGGCCuUGCCCCCCc--GAcCUCc -3'
miRNA:   3'- -AGcGCCCGG-ACGGGGGGcuaCUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 24137 0.68 0.529246
Target:  5'- gCGCGGGCCgUGCCCCaCCuggGGUa-- -3'
miRNA:   3'- aGCGCCCGG-ACGGGG-GGcuaCUAgag -5'
5151 3' -62.1 NC_001798.1 + 150649 0.68 0.528298
Target:  5'- cUCGCGGGgggcguCCUGCCCUCCGccGccgcggcGUCUUc -3'
miRNA:   3'- -AGCGCCC------GGACGGGGGGCuaC-------UAGAG- -5'
5151 3' -62.1 NC_001798.1 + 134985 0.68 0.51979
Target:  5'- cUGgGGGCCUGgCCCgCGGUGggCg- -3'
miRNA:   3'- aGCgCCCGGACgGGGgGCUACuaGag -5'
5151 3' -62.1 NC_001798.1 + 143294 0.68 0.491841
Target:  5'- aCGUagGGGCCguccGCCCCCgGcgGGUCg- -3'
miRNA:   3'- aGCG--CCCGGa---CGGGGGgCuaCUAGag -5'
5151 3' -62.1 NC_001798.1 + 7481 0.68 0.491841
Target:  5'- cCGCGGGCUUGCCUagCCCGGUcccCUa -3'
miRNA:   3'- aGCGCCCGGACGGG--GGGCUAcuaGAg -5'
5151 3' -62.1 NC_001798.1 + 13084 0.69 0.482679
Target:  5'- gCGCGGGCCcggUGCUCCagGAuaaauugugUGAUCUCc -3'
miRNA:   3'- aGCGCCCGG---ACGGGGggCU---------ACUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 32570 0.69 0.482679
Target:  5'- cUGCGGGCCgcgGCCCCCgCG-UGGa--- -3'
miRNA:   3'- aGCGCCCGGa--CGGGGG-GCuACUagag -5'
5151 3' -62.1 NC_001798.1 + 133464 0.69 0.468194
Target:  5'- gCGCGuGGCCgacgcccugagcggcUGCCCCCCGcgcgGGUC-Cg -3'
miRNA:   3'- aGCGC-CCGG---------------ACGGGGGGCua--CUAGaG- -5'
5151 3' -62.1 NC_001798.1 + 69326 0.69 0.464607
Target:  5'- cCGCGcGCCggGCuCCCCUGAgGAUCUUg -3'
miRNA:   3'- aGCGCcCGGa-CG-GGGGGCUaCUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 120221 0.69 0.459254
Target:  5'- cCcCGGGCCguugGCCCCCgccgaggccaggaugCGGUGcAUCUCg -3'
miRNA:   3'- aGcGCCCGGa---CGGGGG---------------GCUAC-UAGAG- -5'
5151 3' -62.1 NC_001798.1 + 26458 0.69 0.446894
Target:  5'- aCGCGGGCCcGCCCCCgcaGAUacgCUg -3'
miRNA:   3'- aGCGCCCGGaCGGGGGg--CUAcuaGAg -5'
5151 3' -62.1 NC_001798.1 + 32064 0.7 0.404326
Target:  5'- cCGCGGGCgCcGCgCCCCCGucgGcGUCUCc -3'
miRNA:   3'- aGCGCCCG-GaCG-GGGGGCua-C-UAGAG- -5'
5151 3' -62.1 NC_001798.1 + 61858 0.7 0.396124
Target:  5'- aCGCGGGCCgccgGCCCagCCCGgcGGccccCUCg -3'
miRNA:   3'- aGCGCCCGGa---CGGG--GGGCuaCUa---GAG- -5'
5151 3' -62.1 NC_001798.1 + 80842 0.71 0.380045
Target:  5'- aCGUGGGCCgucgGCCUCCUccacaccGAUCUCa -3'
miRNA:   3'- aGCGCCCGGa---CGGGGGGcua----CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 6947 0.72 0.306417
Target:  5'- aUCGCGuGCUgGCCCCuuGAUacGAUCUCg -3'
miRNA:   3'- -AGCGCcCGGaCGGGGggCUA--CUAGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.