miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 5' -56.1 NC_001798.1 + 1798 0.67 0.897659
Target:  5'- gCCAgGUAgGCGUGCugccgcgagaccacgGGCccgUCGGcGGGCc -3'
miRNA:   3'- aGGUgCAUgUGCAUG---------------UCG---AGCC-CCCG- -5'
5152 5' -56.1 NC_001798.1 + 58260 0.67 0.897659
Target:  5'- aUCCgACGUACGCaaACAGCagCGgguccgugaggucccGGGGCg -3'
miRNA:   3'- -AGG-UGCAUGUGcaUGUCGa-GC---------------CCCCG- -5'
5152 5' -56.1 NC_001798.1 + 151571 0.67 0.895072
Target:  5'- aUCC-C-UGCGCGU-CGGCgggCGuGGGGCu -3'
miRNA:   3'- -AGGuGcAUGUGCAuGUCGa--GC-CCCCG- -5'
5152 5' -56.1 NC_001798.1 + 68630 0.67 0.895072
Target:  5'- aCCACGUACACGcaACAGagcuCUUGGucccGGCa -3'
miRNA:   3'- aGGUGCAUGUGCa-UGUC----GAGCCc---CCG- -5'
5152 5' -56.1 NC_001798.1 + 65667 0.67 0.895072
Target:  5'- uUCCAgGUACACGcAC-GCcccggUGGGGcGCg -3'
miRNA:   3'- -AGGUgCAUGUGCaUGuCGa----GCCCC-CG- -5'
5152 5' -56.1 NC_001798.1 + 27483 0.67 0.895072
Target:  5'- gCCGCGcgggggcggGCGCGggaaaaaAGCcgcgCGGGGGCg -3'
miRNA:   3'- aGGUGCa--------UGUGCaug----UCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 15821 0.67 0.888444
Target:  5'- gCCAUGagGCGCcgccCGGUUCGGGGGg -3'
miRNA:   3'- aGGUGCa-UGUGcau-GUCGAGCCCCCg -5'
5152 5' -56.1 NC_001798.1 + 27218 0.67 0.888444
Target:  5'- cCCGgGgcgggGCGCGggggagGCGGCcgCGGGGGa -3'
miRNA:   3'- aGGUgCa----UGUGCa-----UGUCGa-GCCCCCg -5'
5152 5' -56.1 NC_001798.1 + 51413 0.67 0.888444
Target:  5'- gCCGcCGUcgcGCACGaugACGGCccCGGGGcGCg -3'
miRNA:   3'- aGGU-GCA---UGUGCa--UGUCGa-GCCCC-CG- -5'
5152 5' -56.1 NC_001798.1 + 142476 0.67 0.888444
Target:  5'- aUCUACGgg-ACGgcccccgagGCGGCgCGGGGGUg -3'
miRNA:   3'- -AGGUGCaugUGCa--------UGUCGaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 39846 0.67 0.881596
Target:  5'- gCCGCGcUGCcgggcgagGCGUcgaGGCuUCGGGGGUg -3'
miRNA:   3'- aGGUGC-AUG--------UGCAug-UCG-AGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 149950 0.67 0.881596
Target:  5'- aCCGCGgcCugGgacgACGGagacgccgaCGGGGGCg -3'
miRNA:   3'- aGGUGCauGugCa---UGUCga-------GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 32883 0.67 0.881596
Target:  5'- aCCACcgGC-CGagGCGcCUCGGGGGCa -3'
miRNA:   3'- aGGUGcaUGuGCa-UGUcGAGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 143384 0.67 0.881596
Target:  5'- cCCACGUGCGCGUccgguGCGGUccccgcaaUCGacucuauGGGCg -3'
miRNA:   3'- aGGUGCAUGUGCA-----UGUCG--------AGCc------CCCG- -5'
5152 5' -56.1 NC_001798.1 + 150627 0.67 0.87453
Target:  5'- cUCCugGgccGCGCGggGCuGuCUCgcgGGGGGCg -3'
miRNA:   3'- -AGGugCa--UGUGCa-UGuC-GAG---CCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 144306 0.67 0.87453
Target:  5'- gUCCAgGgGCACGgaaguCGGCagGGGcGGCg -3'
miRNA:   3'- -AGGUgCaUGUGCau---GUCGagCCC-CCG- -5'
5152 5' -56.1 NC_001798.1 + 34947 0.67 0.87453
Target:  5'- uUUCGCGaACGC--GCGGCgccggaGGGGGCg -3'
miRNA:   3'- -AGGUGCaUGUGcaUGUCGag----CCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 9694 0.67 0.87453
Target:  5'- cUCACGUGCggGCGgguggGCucgacgGGCUCGGGcuGGCg -3'
miRNA:   3'- aGGUGCAUG--UGCa----UG------UCGAGCCC--CCG- -5'
5152 5' -56.1 NC_001798.1 + 2706 0.67 0.87453
Target:  5'- gCCGCGgcgACGguguCGgcCAGCa-GGGGGCg -3'
miRNA:   3'- aGGUGCa--UGU----GCauGUCGagCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 23229 0.67 0.867252
Target:  5'- gUCCGCGgaccggagACgACGUccGCGGUcCGcGGGGCg -3'
miRNA:   3'- -AGGUGCa-------UG-UGCA--UGUCGaGC-CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.