miRNA display CGI


Results 61 - 80 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 107101 0.67 0.387007
Target:  5'- gCCCCCgGCCCucACCCUUguuuucgaccgGCACCCUAu- -3'
miRNA:   3'- aGGGGG-CGGG--UGGGGG-----------CGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 23485 0.67 0.387007
Target:  5'- -aCgCCGCCCgcGCCCCCGCcagcGCCgCAGa -3'
miRNA:   3'- agGgGGCGGG--UGGGGGCG----UGGgGUUg -5'
5153 3' -66.4 NC_001798.1 + 52314 0.67 0.387007
Target:  5'- gUUUCgCGCCCugCCCCuggGCAgCCCCGGg -3'
miRNA:   3'- -AGGGgGCGGGugGGGG---CGU-GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 112991 0.67 0.382347
Target:  5'- cCCCCCaucccugaagcuuggGUCCggACCcgggCCCGCGCCgCCAGCa -3'
miRNA:   3'- aGGGGG---------------CGGG--UGG----GGGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 91446 0.67 0.379262
Target:  5'- -nCCCC-CCCACCCgCC-CACCCaaCAGCu -3'
miRNA:   3'- agGGGGcGGGUGGG-GGcGUGGG--GUUG- -5'
5153 3' -66.4 NC_001798.1 + 58943 0.67 0.379262
Target:  5'- cUCCCCCGCCgACCa----GCCUCAGCc -3'
miRNA:   3'- -AGGGGGCGGgUGGgggcgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 60061 0.67 0.394855
Target:  5'- cCCCCCGCCgACCUggagCCGCcggaggACCgCCcGCa -3'
miRNA:   3'- aGGGGGCGGgUGGG----GGCG------UGG-GGuUG- -5'
5153 3' -66.4 NC_001798.1 + 96908 0.67 0.400409
Target:  5'- gCCCCaCGCCgccgggcugucggaCGCCgCCCGCGCgCgAGCg -3'
miRNA:   3'- aGGGG-GCGG--------------GUGG-GGGCGUGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 407 0.67 0.402006
Target:  5'- aUCCCgCCGagcucgcggcagcCCCuccCCCCCGCGCgCCAc- -3'
miRNA:   3'- -AGGG-GGC-------------GGGu--GGGGGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 110922 0.67 0.419007
Target:  5'- gCCCCCGCCgGCCCgCGgucaaACgCgGACa -3'
miRNA:   3'- aGGGGGCGGgUGGGgGCg----UGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 127426 0.67 0.418187
Target:  5'- cUCCUCGCCUAUCgcugcguUCUGCACCCCGc- -3'
miRNA:   3'- aGGGGGCGGGUGG-------GGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 5871 0.67 0.410856
Target:  5'- -gCCCUGCCCgggGCCCgCGuCAUCCCGc- -3'
miRNA:   3'- agGGGGCGGG---UGGGgGC-GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 85309 0.67 0.410856
Target:  5'- gCCCgCgGCCCGCCCgCagACCCCAcgGCa -3'
miRNA:   3'- aGGG-GgCGGGUGGGgGcgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 57120 0.67 0.410856
Target:  5'- gCCgCUGCCgACCCa-GCGgCCCGACg -3'
miRNA:   3'- aGGgGGCGGgUGGGggCGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 23804 0.67 0.410856
Target:  5'- gCCgUgGCCCGgggccggcCCCCCGC-CCCCGGg -3'
miRNA:   3'- aGGgGgCGGGU--------GGGGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 32857 0.67 0.402805
Target:  5'- gCCCgaaggaagCCGCCC-CCCaCCGgACCaCCGGCc -3'
miRNA:   3'- aGGG--------GGCGGGuGGG-GGCgUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 130456 0.67 0.402805
Target:  5'- gCCCCCGgCCACUgCUGCuCCaCCAc- -3'
miRNA:   3'- aGGGGGCgGGUGGgGGCGuGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 105073 0.67 0.402805
Target:  5'- aCUCCCGacgaaCCCGCggCCCCGCGgCCCGcguACa -3'
miRNA:   3'- aGGGGGC-----GGGUG--GGGGCGUgGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 92008 0.67 0.402805
Target:  5'- aCCCCauCCCACCCauCC-CACCCCcACc -3'
miRNA:   3'- aGGGGgcGGGUGGG--GGcGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 79706 0.67 0.402805
Target:  5'- gCCCCCGCUuccgacggaCGUCCUCGaaucgGCCCCGACg -3'
miRNA:   3'- aGGGGGCGG---------GUGGGGGCg----UGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.