miRNA display CGI


Results 81 - 100 of 402 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 85309 0.67 0.410856
Target:  5'- gCCCgCgGCCCGCCCgCagACCCCAcgGCa -3'
miRNA:   3'- aGGG-GgCGGGUGGGgGcgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 5871 0.67 0.410856
Target:  5'- -gCCCUGCCCgggGCCCgCGuCAUCCCGc- -3'
miRNA:   3'- agGGGGCGGG---UGGGgGC-GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 127426 0.67 0.418187
Target:  5'- cUCCUCGCCUAUCgcugcguUCUGCACCCCGc- -3'
miRNA:   3'- aGGGGGCGGGUGG-------GGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 110922 0.67 0.419007
Target:  5'- gCCCCCGCCgGCCCgCGgucaaACgCgGACa -3'
miRNA:   3'- aGGGGGCGGgUGGGgGCg----UGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 126311 0.67 0.419007
Target:  5'- gUCUCCggaGCCCGCCCCgGguCCCgCcGCc -3'
miRNA:   3'- -AGGGGg--CGGGUGGGGgCguGGG-GuUG- -5'
5153 3' -66.4 NC_001798.1 + 105073 0.67 0.402805
Target:  5'- aCUCCCGacgaaCCCGCggCCCCGCGgCCCGcguACa -3'
miRNA:   3'- aGGGGGC-----GGGUG--GGGGCGUgGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 92008 0.67 0.402805
Target:  5'- aCCCCauCCCACCCauCC-CACCCCcACc -3'
miRNA:   3'- aGGGGgcGGGUGGG--GGcGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 73308 0.67 0.394065
Target:  5'- -aCCCgGCCCacaggacacgcagGCCCgCGCGCCgUCGACg -3'
miRNA:   3'- agGGGgCGGG-------------UGGGgGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 137350 0.67 0.394065
Target:  5'- aUCCCUgcguucgaCGCCCcaGCCCUgguccggCGCACCCCucGGCg -3'
miRNA:   3'- -AGGGG--------GCGGG--UGGGG-------GCGUGGGG--UUG- -5'
5153 3' -66.4 NC_001798.1 + 32294 0.67 0.394855
Target:  5'- aCCUCCcUCgGCCCCCGCGCUgCuGCg -3'
miRNA:   3'- aGGGGGcGGgUGGGGGCGUGGgGuUG- -5'
5153 3' -66.4 NC_001798.1 + 34546 0.67 0.394855
Target:  5'- -gCCCC-CCC-CCCCCGgAgccugggucCCCCGGCg -3'
miRNA:   3'- agGGGGcGGGuGGGGGCgU---------GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 69868 0.67 0.394855
Target:  5'- cCCCCCacacacacuCCCACCCgacaGCACCCgGGCc -3'
miRNA:   3'- aGGGGGc--------GGGUGGGgg--CGUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 60061 0.67 0.394855
Target:  5'- cCCCCCGCCgACCUggagCCGCcggaggACCgCCcGCa -3'
miRNA:   3'- aGGGGGCGGgUGGG----GGCG------UGG-GGuUG- -5'
5153 3' -66.4 NC_001798.1 + 96908 0.67 0.400409
Target:  5'- gCCCCaCGCCgccgggcugucggaCGCCgCCCGCGCgCgAGCg -3'
miRNA:   3'- aGGGG-GCGG--------------GUGG-GGGCGUGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 407 0.67 0.402006
Target:  5'- aUCCCgCCGagcucgcggcagcCCCuccCCCCCGCGCgCCAc- -3'
miRNA:   3'- -AGGG-GGC-------------GGGu--GGGGGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 79706 0.67 0.402805
Target:  5'- gCCCCCGCUuccgacggaCGUCCUCGaaucgGCCCCGACg -3'
miRNA:   3'- aGGGGGCGG---------GUGGGGGCg----UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 139310 0.68 0.364087
Target:  5'- gUCgCCGcCCCGCgUCCGCAUCgCCGGCg -3'
miRNA:   3'- aGGgGGC-GGGUGgGGGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 34005 0.68 0.364087
Target:  5'- cCCCCCGCCCGCgCCCaCGCGgUa---- -3'
miRNA:   3'- aGGGGGCGGGUG-GGG-GCGUgGgguug -5'
5153 3' -66.4 NC_001798.1 + 86840 0.68 0.364087
Target:  5'- cUCCCgGCCCggGCCCggCCGCGacaagaCCCGGCg -3'
miRNA:   3'- aGGGGgCGGG--UGGG--GGCGUg-----GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 52271 0.68 0.364087
Target:  5'- -aCUCCGCCCACCCCgCGUuUgCgGACg -3'
miRNA:   3'- agGGGGCGGGUGGGG-GCGuGgGgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.