miRNA display CGI


Results 101 - 120 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 105448 0.68 0.349337
Target:  5'- gCCgCCCGCuCCGCCgCCGUcUCCCGGg -3'
miRNA:   3'- aGG-GGGCG-GGUGGgGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 81949 0.68 0.349337
Target:  5'- uUCCCgCC-CCCACgCUCGCGCCCa--- -3'
miRNA:   3'- -AGGG-GGcGGGUGgGGGCGUGGGguug -5'
5153 3' -66.4 NC_001798.1 + 126490 0.68 0.349337
Target:  5'- gCCCCCgucGCCC-CCCUCGCACaUCCu-- -3'
miRNA:   3'- aGGGGG---CGGGuGGGGGCGUG-GGGuug -5'
5153 3' -66.4 NC_001798.1 + 54823 0.68 0.349337
Target:  5'- -gCUUgGCgCCACCCCCGC-CgCCGACa -3'
miRNA:   3'- agGGGgCG-GGUGGGGGCGuGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 138727 0.68 0.342124
Target:  5'- gCCCCgGgCCggcGCgCUCCGCgGCCCCGGCg -3'
miRNA:   3'- aGGGGgCgGG---UG-GGGGCG-UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 127651 0.68 0.342124
Target:  5'- gUCUCCCGCCUcugucacgccaACCCggCCGCGCgCCAc- -3'
miRNA:   3'- -AGGGGGCGGG-----------UGGG--GGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 148551 0.68 0.335018
Target:  5'- gCCCCCGCCCcacuuuCCCCCcucucuaucaaaGUuCCCUGGCc -3'
miRNA:   3'- aGGGGGCGGGu-----GGGGG------------CGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 23411 0.68 0.356659
Target:  5'- gUCCUCCGCCUccuCCUCCGC-CUCCu-- -3'
miRNA:   3'- -AGGGGGCGGGu--GGGGGCGuGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 25447 0.68 0.356659
Target:  5'- -gCCCCGCCCcccggcggcgcGCCCgCCGC-CUUCGGCc -3'
miRNA:   3'- agGGGGCGGG-----------UGGG-GGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 51124 0.68 0.356659
Target:  5'- gCCCCCGCgCCgucgccgggagGCCCgCGguCACCCCGGg -3'
miRNA:   3'- aGGGGGCG-GG-----------UGGGgGC--GUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 139310 0.68 0.364087
Target:  5'- gUCgCCGcCCCGCgUCCGCAUCgCCGGCg -3'
miRNA:   3'- aGGgGGC-GGGUGgGGGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 34005 0.68 0.364087
Target:  5'- cCCCCCGCCCGCgCCCaCGCGgUa---- -3'
miRNA:   3'- aGGGGGCGGGUG-GGG-GCGUgGgguug -5'
5153 3' -66.4 NC_001798.1 + 86840 0.68 0.364087
Target:  5'- cUCCCgGCCCggGCCCggCCGCGacaagaCCCGGCg -3'
miRNA:   3'- aGGGGgCGGG--UGGG--GGCGUg-----GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 52271 0.68 0.364087
Target:  5'- -aCUCCGCCCACCCCgCGUuUgCgGACg -3'
miRNA:   3'- agGGGGCGGGUGGGG-GCGuGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 29986 0.68 0.364087
Target:  5'- aCCCCCGUggGCCgugcgCCGCcCCCCGACc -3'
miRNA:   3'- aGGGGGCGggUGGg----GGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 5416 0.68 0.364087
Target:  5'- gCCgCCGCuCCGCCCgCGCggcaucucauuaGCgCCCGGCg -3'
miRNA:   3'- aGGgGGCG-GGUGGGgGCG------------UG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 78809 0.68 0.363339
Target:  5'- --aCCCGCUaagCGCCgCCCGCggcgacgGCCCCGGCc -3'
miRNA:   3'- aggGGGCGG---GUGG-GGGCG-------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 108269 0.68 0.361847
Target:  5'- aCCCCCgacGCCagcgACCCCCagcgcggacgcuugGCGCCCCcgGGCg -3'
miRNA:   3'- aGGGGG---CGGg---UGGGGG--------------CGUGGGG--UUG- -5'
5153 3' -66.4 NC_001798.1 + 135343 0.68 0.356659
Target:  5'- aCgCgUGCgacgCCugCCCCGCGCUCCGGCa -3'
miRNA:   3'- aGgGgGCG----GGugGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 128749 0.68 0.356659
Target:  5'- aCCCUCacgGCUaccugGCCCCCGCcCCCCAGa -3'
miRNA:   3'- aGGGGG---CGGg----UGGGGGCGuGGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.