miRNA display CGI


Results 41 - 60 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 145539 0.78 0.069023
Target:  5'- gCCCCCGCCCgGCCgCCCGCgucGCgCCGGCg -3'
miRNA:   3'- aGGGGGCGGG-UGG-GGGCG---UGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 55153 0.78 0.067313
Target:  5'- aUgCCCGCCCGCCCCCGgACCaacgcgcuggCCAACg -3'
miRNA:   3'- aGgGGGCGGGUGGGGGCgUGG----------GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31952 0.78 0.067313
Target:  5'- gCCCCgCGCUCGCCCCuCGCcCCCCAGg -3'
miRNA:   3'- aGGGG-GCGGGUGGGG-GCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 145730 0.78 0.074406
Target:  5'- gCCCCgGCCCGCgCCCCGCcgccacACCCaCGGCa -3'
miRNA:   3'- aGGGGgCGGGUG-GGGGCG------UGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 5560 0.78 0.067313
Target:  5'- gCUCCCGUUgGCCCCCGCcgGCCCCAAa -3'
miRNA:   3'- aGGGGGCGGgUGGGGGCG--UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 21087 0.78 0.074406
Target:  5'- cCCCCCgGCCCGucCCCCCGUccCCCCGGCc -3'
miRNA:   3'- aGGGGG-CGGGU--GGGGGCGu-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31459 0.78 0.076289
Target:  5'- cUCCCCCGCCgucuccgcgcCGCCCCgCGgGCCCCGGg -3'
miRNA:   3'- -AGGGGGCGG----------GUGGGG-GCgUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 145892 0.78 0.072568
Target:  5'- -aCCCCGaCCGCCgCCGCGCCCCAccgGCg -3'
miRNA:   3'- agGGGGCgGGUGGgGGCGUGGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 21129 0.78 0.074406
Target:  5'- cCCCCCgGCCCGucCCCCCGUccCCCCGGCc -3'
miRNA:   3'- aGGGGG-CGGGU--GGGGGCGu-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 35948 0.78 0.074406
Target:  5'- uUCCUUCGCCCGCCCgCCuCGCCCCGGa -3'
miRNA:   3'- -AGGGGGCGGGUGGG-GGcGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 151860 0.78 0.074406
Target:  5'- aCCCCCGCgCCGuguCCCCCGUgucccucccucACCCCGGCc -3'
miRNA:   3'- aGGGGGCG-GGU---GGGGGCG-----------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 127781 0.77 0.090574
Target:  5'- -aCCCCGCCCGcgaccccgauaguCCCCCGaagcgGCCCCGACc -3'
miRNA:   3'- agGGGGCGGGU-------------GGGGGCg----UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 21328 0.77 0.090799
Target:  5'- cCCCCCGgCC-CCCCgGCcCCCCGGCc -3'
miRNA:   3'- aGGGGGCgGGuGGGGgCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 34418 0.77 0.084075
Target:  5'- cUCUUCCGCCCGCCCCCccccccucuccccGcCGCCUCAGCa -3'
miRNA:   3'- -AGGGGGCGGGUGGGGG-------------C-GUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 81856 0.77 0.082213
Target:  5'- cUCCCgaccagCCGCCCACCCCggagucCGCGcCCCCGGCu -3'
miRNA:   3'- -AGGG------GGCGGGUGGGG------GCGU-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 40317 0.76 0.098759
Target:  5'- cUCCCCGucgggcgucaccgccCCCGCCCCCGCcguCCCCAGa -3'
miRNA:   3'- aGGGGGC---------------GGGUGGGGGCGu--GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 145622 0.76 0.095405
Target:  5'- -aCCCCGcCCCACcgCCCCGCccggcagggggGCCCCGGCg -3'
miRNA:   3'- agGGGGC-GGGUG--GGGGCG-----------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24500 0.76 0.09779
Target:  5'- -gCCgCGCCCGCCUCCGCGCCggccggggCCGACg -3'
miRNA:   3'- agGGgGCGGGUGGGGGCGUGG--------GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 152614 0.76 0.099493
Target:  5'- cCCCCCGCCgAcgcagaugggagucCCCCCgGCGCCCCGccgGCg -3'
miRNA:   3'- aGGGGGCGGgU--------------GGGGG-CGUGGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 45512 0.76 0.100231
Target:  5'- aUCCCCCGUUCGCCccgggCCCGUGCCCCccGCg -3'
miRNA:   3'- -AGGGGGCGGGUGG-----GGGCGUGGGGu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.