miRNA display CGI


Results 61 - 80 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 152614 0.76 0.099493
Target:  5'- cCCCCCGCCgAcgcagaugggagucCCCCCgGCGCCCCGccgGCg -3'
miRNA:   3'- aGGGGGCGGgU--------------GGGGG-CGUGGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 45512 0.76 0.100231
Target:  5'- aUCCCCCGUUCGCCccgggCCCGUGCCCCccGCg -3'
miRNA:   3'- -AGGGGGCGGGUGG-----GGGCGUGGGGu-UG- -5'
5153 3' -66.4 NC_001798.1 + 47368 0.76 0.102477
Target:  5'- cUCCCCCGCaacccgcagggagCCACUCCCGCgGCCCCc-- -3'
miRNA:   3'- -AGGGGGCG-------------GGUGGGGGCG-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 62181 0.76 0.10273
Target:  5'- gUCCgCUGCCaCACagaCCUGCACCCCAAUa -3'
miRNA:   3'- -AGGgGGCGG-GUGg--GGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 137936 0.76 0.107112
Target:  5'- cUCCCCCGgCCGCCCgguCCGCcgcgcgcugcucccGCUCCAGCg -3'
miRNA:   3'- -AGGGGGCgGGUGGG---GGCG--------------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25027 0.76 0.107904
Target:  5'- cUCgCCgCGCCCGCCUCCGCGCCgCGGg -3'
miRNA:   3'- -AGgGG-GCGGGUGGGGGCGUGGgGUUg -5'
5153 3' -66.4 NC_001798.1 + 128830 0.76 0.107904
Target:  5'- -aCCCCGCggACCCCgGCGCCCCcGCg -3'
miRNA:   3'- agGGGGCGggUGGGGgCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 30870 0.75 0.110582
Target:  5'- gCCCUguCGCCCAccCCCCCGUGgCCCGGCa -3'
miRNA:   3'- aGGGG--GCGGGU--GGGGGCGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 16254 0.75 0.110582
Target:  5'- cUCCCCGCCCACCUCU--ACCCaCAACa -3'
miRNA:   3'- aGGGGGCGGGUGGGGGcgUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 27926 0.75 0.113045
Target:  5'- gUCCCCGCCgccggggucccggCGCCggCCGCGCCCCGGCg -3'
miRNA:   3'- aGGGGGCGG-------------GUGGg-GGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 82544 0.75 0.113322
Target:  5'- gCCCCUGCCCcagccGCCCCUGCcGCCCgUAACu -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCG-UGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 51198 0.75 0.113322
Target:  5'- cCCCCCGCCgGgcguCCUuuCCGCGCCCCAGg -3'
miRNA:   3'- aGGGGGCGGgU----GGG--GGCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 138418 0.75 0.113322
Target:  5'- aCCCCgCGCUCgcugucGCUCuuGCGCCCCAACa -3'
miRNA:   3'- aGGGG-GCGGG------UGGGggCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 150776 0.75 0.116125
Target:  5'- gCCCCCagacccagauCCCACCCCCGC-CCgCAACg -3'
miRNA:   3'- aGGGGGc---------GGGUGGGGGCGuGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 115335 0.75 0.116125
Target:  5'- gCCCCCGgCCACCcggagcCCCGCGcguucccuCCCCGGCa -3'
miRNA:   3'- aGGGGGCgGGUGG------GGGCGU--------GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25139 0.75 0.118704
Target:  5'- cCCCCCGCCCcgcggccGCCCcucccgcgggggCCGCGCCCCc-- -3'
miRNA:   3'- aGGGGGCGGG-------UGGG------------GGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 30201 0.75 0.118993
Target:  5'- -gUCCCGCCuCACgCCCCGCGCCCUc-- -3'
miRNA:   3'- agGGGGCGG-GUG-GGGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 35746 0.75 0.118993
Target:  5'- gCCCggCCGCCCACuCCCCGCucggccuCUCCGGCu -3'
miRNA:   3'- aGGG--GGCGGGUG-GGGGCGu------GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 22842 0.75 0.124928
Target:  5'- aCCgCCGCCCACCCcgaacccggaCCGuCGCCCCGccGCg -3'
miRNA:   3'- aGGgGGCGGGUGGG----------GGC-GUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 146233 0.74 0.127998
Target:  5'- gUCCCgaCGCCCccCCCCCGC-CgCCCGACg -3'
miRNA:   3'- -AGGGg-GCGGGu-GGGGGCGuG-GGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.