miRNA display CGI


Results 81 - 100 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 122518 0.74 0.131137
Target:  5'- aCCCCUGCgCCACCCgCGC-CCCguGCu -3'
miRNA:   3'- aGGGGGCG-GGUGGGgGCGuGGGguUG- -5'
5153 3' -66.4 NC_001798.1 + 87734 0.74 0.134346
Target:  5'- gCCCCCGCCgGCccgaaCCCCGCgGCCCUGAg -3'
miRNA:   3'- aGGGGGCGGgUG-----GGGGCG-UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 80174 0.74 0.134346
Target:  5'- gUCCagCGCCUGaCCCCGCAUCCCGACg -3'
miRNA:   3'- -AGGggGCGGGUgGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 149135 0.74 0.137297
Target:  5'- cCCCCCcCCCACCUCCcccugcccccgagGCGCCUCGGCc -3'
miRNA:   3'- aGGGGGcGGGUGGGGG-------------CGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 145764 0.74 0.137629
Target:  5'- aCCCCCcCCCGCCgCC-CACCCCGGg -3'
miRNA:   3'- aGGGGGcGGGUGGgGGcGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 114363 0.74 0.137629
Target:  5'- gCCCCucauCGCCCGCgacggCCCGCACCCCGu- -3'
miRNA:   3'- aGGGG----GCGGGUGg----GGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 123742 0.74 0.137629
Target:  5'- aCCUCCGCagcuaacgCACCCCCGgACCCCGcuGCu -3'
miRNA:   3'- aGGGGGCGg-------GUGGGGGCgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 21171 0.74 0.137629
Target:  5'- cCCCCCgGCCCGucCCCCCGUcCCCCc-- -3'
miRNA:   3'- aGGGGG-CGGGU--GGGGGCGuGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 146960 0.74 0.140984
Target:  5'- uUCCCCCGCCUcccgucuuCUUCCGCGCCuCCGAg -3'
miRNA:   3'- -AGGGGGCGGGu-------GGGGGCGUGG-GGUUg -5'
5153 3' -66.4 NC_001798.1 + 74603 0.74 0.140984
Target:  5'- cUCCCCgCGCCCACCCaCGUccagACCCCu-- -3'
miRNA:   3'- -AGGGG-GCGGGUGGGgGCG----UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 142009 0.74 0.140984
Target:  5'- uUCCCUCGCgUuCCCaCCGCACCCgGGCc -3'
miRNA:   3'- -AGGGGGCGgGuGGG-GGCGUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 95054 0.74 0.140984
Target:  5'- cUCCCUcgaCGCgCACCCCgGCGCCUgGACg -3'
miRNA:   3'- -AGGGG---GCGgGUGGGGgCGUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 92140 0.74 0.143377
Target:  5'- cUCCCCCGUCUGCCCCCggucgucuugccggGC-CCCCGu- -3'
miRNA:   3'- -AGGGGGCGGGUGGGGG--------------CGuGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 361 0.74 0.144414
Target:  5'- cCCgCCCGCCCGCacacgguuCCCCGCcACCCCc-- -3'
miRNA:   3'- aGG-GGGCGGGUG--------GGGGCG-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 111732 0.74 0.144414
Target:  5'- --gCCCGCuUgGCCCCCGCGcCCCCGGCc -3'
miRNA:   3'- aggGGGCG-GgUGGGGGCGU-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31622 0.74 0.144414
Target:  5'- -gCCCCGCgCCGCCgCCGC-CCCCGu- -3'
miRNA:   3'- agGGGGCG-GGUGGgGGCGuGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 82253 0.74 0.144414
Target:  5'- cCCCCCGCCUuugGCCCCagGCccgguuGCCCCGAg -3'
miRNA:   3'- aGGGGGCGGG---UGGGGg-CG------UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 98682 0.74 0.144414
Target:  5'- cCCCCCGuCCCGagCCCCGCgACCaCCAAg -3'
miRNA:   3'- aGGGGGC-GGGUg-GGGGCG-UGG-GGUUg -5'
5153 3' -66.4 NC_001798.1 + 25364 0.74 0.147921
Target:  5'- aCCaCCCGCUCuuCCCCGCGCCgUGGCg -3'
miRNA:   3'- aGG-GGGCGGGugGGGGCGUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31827 0.74 0.147921
Target:  5'- gUCCCCCGCggcaccaaCACCCCCGgugcCGCCCCccACg -3'
miRNA:   3'- -AGGGGGCGg-------GUGGGGGC----GUGGGGu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.