miRNA display CGI


Results 101 - 120 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 31827 0.74 0.147921
Target:  5'- gUCCCCCGCggcaccaaCACCCCCGgugcCGCCCCccACg -3'
miRNA:   3'- -AGGGGGCGg-------GUGGGGGC----GUGGGGu-UG- -5'
5153 3' -66.4 NC_001798.1 + 27982 0.74 0.147921
Target:  5'- gCCCCggCGCuCCAgCCgugCCGCGCCCCGGCg -3'
miRNA:   3'- aGGGG--GCG-GGUgGG---GGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 75043 0.73 0.151504
Target:  5'- gCCCCCGUcgCCGCCgaggucCCCGCcuccuCCCCGACg -3'
miRNA:   3'- aGGGGGCG--GGUGG------GGGCGu----GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 62499 0.73 0.151504
Target:  5'- cUCaCCCCGCCCgaGCUCgUGCAgguCCCCAACg -3'
miRNA:   3'- -AG-GGGGCGGG--UGGGgGCGU---GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 3125 0.73 0.155167
Target:  5'- gCCaCgCgGCCCGCCUCCGCGCgCCGGCc -3'
miRNA:   3'- aGG-G-GgCGGGUGGGGGCGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25228 0.73 0.155167
Target:  5'- --aCCCGCCgGCCCgCCGaggGCCCCGACc -3'
miRNA:   3'- aggGGGCGGgUGGG-GGCg--UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31404 0.73 0.155167
Target:  5'- cCCCCCGCgagaCAgCCCCGCGCggCCCAGg -3'
miRNA:   3'- aGGGGGCGg---GUgGGGGCGUG--GGGUUg -5'
5153 3' -66.4 NC_001798.1 + 32582 0.73 0.158909
Target:  5'- gCCCCCGCguggagccgCCGCaCCCUGCuCCCCGAg -3'
miRNA:   3'- aGGGGGCG---------GGUG-GGGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 147413 0.73 0.158909
Target:  5'- uUCCCCCcCCCcCCCCCGCcGCCgCCGc- -3'
miRNA:   3'- -AGGGGGcGGGuGGGGGCG-UGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 14739 0.73 0.158909
Target:  5'- cCCCCCaccCCCACCCCCuaAUCCCGc- -3'
miRNA:   3'- aGGGGGc--GGGUGGGGGcgUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 127854 0.73 0.158909
Target:  5'- -gCCCCGCCCcGCCCCacccCGCCCCAc- -3'
miRNA:   3'- agGGGGCGGG-UGGGGgc--GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 54527 0.73 0.162733
Target:  5'- cUCCCCGa--GCCCCCGCACgUCGACg -3'
miRNA:   3'- aGGGGGCgggUGGGGGCGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 122454 0.73 0.162733
Target:  5'- gCCCCCaccaGCUguCCCCCGCGgCCCAGa -3'
miRNA:   3'- aGGGGG----CGGguGGGGGCGUgGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 25194 0.73 0.162733
Target:  5'- gCCgCCGCCgCGgCCgCCGCGCCCCGcgGCg -3'
miRNA:   3'- aGGgGGCGG-GUgGG-GGCGUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 76017 0.73 0.162733
Target:  5'- gCCCCgUGCCCGCccgCCCUGgGCCCCGAg -3'
miRNA:   3'- aGGGG-GCGGGUG---GGGGCgUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 27726 0.73 0.16664
Target:  5'- gUCCCCGUCCugCCgCCGCcccuuaagaggGCCCgCAACa -3'
miRNA:   3'- aGGGGGCGGGugGG-GGCG-----------UGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 82326 0.73 0.16664
Target:  5'- gUUgCCCG-CCGCCCCC-CACCCCAGu -3'
miRNA:   3'- -AGgGGGCgGGUGGGGGcGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 128313 0.73 0.170227
Target:  5'- cCCCCCGUCCGCCgCCGaagccguCGCCCCc-- -3'
miRNA:   3'- aGGGGGCGGGUGGgGGC-------GUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 145304 0.73 0.170227
Target:  5'- aUCCCCCGCguccuccCCuCCCCCGCGuccuccccuCCCCcGCg -3'
miRNA:   3'- -AGGGGGCG-------GGuGGGGGCGU---------GGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 77952 0.73 0.17063
Target:  5'- cCCCCCGCUCGCCgCCauccacCGCCUCGGCu -3'
miRNA:   3'- aGGGGGCGGGUGGgGGc-----GUGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.