miRNA display CGI


Results 81 - 100 of 402 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 4020 0.67 0.379262
Target:  5'- gCCCguggcgucgcggCCGgCCACCgCCGCGCgggCCCGGCg -3'
miRNA:   3'- aGGG------------GGCgGGUGGgGGCGUG---GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 21795 0.67 0.379262
Target:  5'- cCCCCCguccggGCCCGCCucggggcggagCCCGCgggaugacgcggGCCCCGGg -3'
miRNA:   3'- aGGGGG------CGGGUGG-----------GGGCG------------UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 134372 0.67 0.379262
Target:  5'- gCCCgCCGgCCGCuCCUCGCGCCgCCc-- -3'
miRNA:   3'- aGGG-GGCgGGUG-GGGGCGUGG-GGuug -5'
5153 3' -66.4 NC_001798.1 + 23353 0.67 0.379262
Target:  5'- cCCCCCGCCgGCgCUCGgcCGCCuCUGACu -3'
miRNA:   3'- aGGGGGCGGgUGgGGGC--GUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 28365 0.67 0.379262
Target:  5'- cCCCCCGCguccCCGCCCgcggaCGCGCCgCGc- -3'
miRNA:   3'- aGGGGGCG----GGUGGGg----GCGUGGgGUug -5'
5153 3' -66.4 NC_001798.1 + 58943 0.67 0.379262
Target:  5'- cUCCCCCGCCgACCa----GCCUCAGCc -3'
miRNA:   3'- -AGGGGGCGGgUGGgggcgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 91446 0.67 0.379262
Target:  5'- -nCCCC-CCCACCCgCC-CACCCaaCAGCu -3'
miRNA:   3'- agGGGGcGGGUGGG-GGcGUGGG--GUUG- -5'
5153 3' -66.4 NC_001798.1 + 31679 0.67 0.378493
Target:  5'- gCCgCCCGCCgugccgguggacgCGCaCCgCGCGCCCCGGu -3'
miRNA:   3'- aGG-GGGCGG-------------GUG-GGgGCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 5733 0.67 0.378493
Target:  5'- -gCCCUGCCCgggGCCCgCGUcaucccgcgcuccGCCCCAAa -3'
miRNA:   3'- agGGGGCGGG---UGGGgGCG-------------UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 61864 0.67 0.371622
Target:  5'- gCCgCCgGCCCAgCCCgGCGgCCCCcuCg -3'
miRNA:   3'- aGG-GGgCGGGUgGGGgCGU-GGGGuuG- -5'
5153 3' -66.4 NC_001798.1 + 59210 0.67 0.371622
Target:  5'- gUUCgCCGCUC-CCgCCCGCgACCCCGGg -3'
miRNA:   3'- -AGGgGGCGGGuGG-GGGCG-UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 59621 0.67 0.371622
Target:  5'- gUCCCCa--CCACCCuCCGCcGCCUCGGg -3'
miRNA:   3'- -AGGGGgcgGGUGGG-GGCG-UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 118291 0.67 0.371622
Target:  5'- gUCCCCGCCC-CCCCCagggGgGCUUgGACu -3'
miRNA:   3'- aGGGGGCGGGuGGGGG----CgUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 3532 0.67 0.371622
Target:  5'- gCCCCagccgaagcgGCCCGCCgCCauggCGUACCCCAGg -3'
miRNA:   3'- aGGGGg---------CGGGUGG-GG----GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 9021 0.67 0.371622
Target:  5'- -gCCCCGagacccaCCGCCCCC-CGCagCCAGCg -3'
miRNA:   3'- agGGGGCg------GGUGGGGGcGUGg-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 108509 0.67 0.36935
Target:  5'- cCCCCCGCCgaggugACCCagcucaagggacugUCGCacaACCCCGGCg -3'
miRNA:   3'- aGGGGGCGGg-----UGGG--------------GGCG---UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 134799 0.68 0.367088
Target:  5'- gCCCCCggaGCCCugGCCCCCGUcuucgcuuuucugggGCCCgGGu -3'
miRNA:   3'- aGGGGG---CGGG--UGGGGGCG---------------UGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 34005 0.68 0.364087
Target:  5'- cCCCCCGCCCGCgCCCaCGCGgUa---- -3'
miRNA:   3'- aGGGGGCGGGUG-GGG-GCGUgGgguug -5'
5153 3' -66.4 NC_001798.1 + 86840 0.68 0.364087
Target:  5'- cUCCCgGCCCggGCCCggCCGCGacaagaCCCGGCg -3'
miRNA:   3'- aGGGGgCGGG--UGGG--GGCGUg-----GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 52271 0.68 0.364087
Target:  5'- -aCUCCGCCCACCCCgCGUuUgCgGACg -3'
miRNA:   3'- agGGGGCGGGUGGGG-GCGuGgGgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.