miRNA display CGI


Results 61 - 80 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 21396 0.73 0.174705
Target:  5'- cCCCCCgGCCCGuCCCCCcgGCccguccCCCCGGCc -3'
miRNA:   3'- aGGGGG-CGGGU-GGGGG--CGu-----GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 21435 0.71 0.236005
Target:  5'- cCCCCCgGCCCGuCCCCC-CGgCCCGu- -3'
miRNA:   3'- aGGGGG-CGGGU-GGGGGcGUgGGGUug -5'
5153 3' -66.4 NC_001798.1 + 21467 0.79 0.059359
Target:  5'- gUCCCCCGCCCGuCCCCCcggccgGCcCCCCGGg -3'
miRNA:   3'- -AGGGGGCGGGU-GGGGG------CGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 21795 0.67 0.379262
Target:  5'- cCCCCCguccggGCCCGCCucggggcggagCCCGCgggaugacgcggGCCCCGGg -3'
miRNA:   3'- aGGGGG------CGGGUGG-----------GGGCG------------UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 22079 0.71 0.214932
Target:  5'- -gCCCCGCCCccuuuggggcggaGCCgCCCGCGgaCCAACg -3'
miRNA:   3'- agGGGGCGGG-------------UGG-GGGCGUggGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 22452 0.79 0.062425
Target:  5'- cUUUCCC-CCCGCCCCgCGCGCCCCGAg -3'
miRNA:   3'- -AGGGGGcGGGUGGGG-GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 22624 0.71 0.210528
Target:  5'- aCCCCCcCCCACUgCCGC-CCCUGAa -3'
miRNA:   3'- aGGGGGcGGGUGGgGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 22842 0.75 0.124928
Target:  5'- aCCgCCGCCCACCCcgaacccggaCCGuCGCCCCGccGCg -3'
miRNA:   3'- aGGgGGCGGGUGGG----------GGC-GUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 23073 0.7 0.269934
Target:  5'- aUCCCgUCGCCC-CCCCCGgAgCgCGACg -3'
miRNA:   3'- -AGGG-GGCGGGuGGGGGCgUgGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 23275 0.7 0.252501
Target:  5'- aCCCCauggccaGCCUgucgccgcgACCCCCgGCGCCCCGccgACa -3'
miRNA:   3'- aGGGGg------CGGG---------UGGGGG-CGUGGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 23353 0.67 0.379262
Target:  5'- cCCCCCGCCgGCgCUCGgcCGCCuCUGACu -3'
miRNA:   3'- aGGGGGCGGgUGgGGGC--GUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 23411 0.68 0.356659
Target:  5'- gUCCUCCGCCUccuCCUCCGC-CUCCu-- -3'
miRNA:   3'- -AGGGGGCGGGu--GGGGGCGuGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 23485 0.67 0.387007
Target:  5'- -aCgCCGCCCgcGCCCCCGCcagcGCCgCAGa -3'
miRNA:   3'- agGgGGCGGG--UGGGGGCG----UGGgGUUg -5'
5153 3' -66.4 NC_001798.1 + 23619 0.71 0.220422
Target:  5'- gCCCCgGCCCggACCCCCGCggcgACCgCGGg -3'
miRNA:   3'- aGGGGgCGGG--UGGGGGCG----UGGgGUUg -5'
5153 3' -66.4 NC_001798.1 + 23804 0.67 0.410856
Target:  5'- gCCgUgGCCCGgggccggcCCCCCGC-CCCCGGg -3'
miRNA:   3'- aGGgGgCGGGU--------GGGGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 24267 0.7 0.264017
Target:  5'- gCCUgCGCCgCGCCUaCGCGCCCCuGCu -3'
miRNA:   3'- aGGGgGCGG-GUGGGgGCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 24374 0.66 0.461177
Target:  5'- gCCCgCgggaaGCCCGCCgCCGCcgccGCCCCGu- -3'
miRNA:   3'- aGGGgG-----CGGGUGGgGGCG----UGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 24500 0.76 0.09779
Target:  5'- -gCCgCGCCCGCCUCCGCGCCggccggggCCGACg -3'
miRNA:   3'- agGGgGCGGGUGGGGGCGUGG--------GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24693 0.79 0.057881
Target:  5'- cCCggCCCGCCgCGCCCCCGCGCCCgGGg -3'
miRNA:   3'- aGG--GGGCGG-GUGGGGGCGUGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 24737 0.72 0.183117
Target:  5'- -gCCCCGCCgCACgCCgaCGCGCCCCGccuGCg -3'
miRNA:   3'- agGGGGCGG-GUG-GGg-GCGUGGGGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.