miRNA display CGI


Results 81 - 100 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 24924 0.66 0.461177
Target:  5'- gCCCgCGCCUgcugagcuccGCCgCCGCGCCgCCGc- -3'
miRNA:   3'- aGGGgGCGGG----------UGGgGGCGUGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 24990 0.66 0.461177
Target:  5'- cCCCCUGCUgGCCgacaCCGuCGCCgCGGCc -3'
miRNA:   3'- aGGGGGCGGgUGGg---GGC-GUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25027 0.76 0.107904
Target:  5'- cUCgCCgCGCCCGCCUCCGCGCCgCGGg -3'
miRNA:   3'- -AGgGG-GCGGGUGGGGGCGUGGgGUUg -5'
5153 3' -66.4 NC_001798.1 + 25073 0.7 0.268148
Target:  5'- -gCCCCGCCCcggccaggGCgccgccgggcggcgCCCCGCGCCCCc-- -3'
miRNA:   3'- agGGGGCGGG--------UG--------------GGGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 25139 0.75 0.118704
Target:  5'- cCCCCCGCCCcgcggccGCCCcucccgcgggggCCGCGCCCCc-- -3'
miRNA:   3'- aGGGGGCGGG-------UGGG------------GGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 25194 0.73 0.162733
Target:  5'- gCCgCCGCCgCGgCCgCCGCGCCCCGcgGCg -3'
miRNA:   3'- aGGgGGCGG-GUgGG-GGCGUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 25228 0.73 0.155167
Target:  5'- --aCCCGCCgGCCCgCCGaggGCCCCGACc -3'
miRNA:   3'- aggGGGCGGgUGGG-GGCg--UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25305 0.69 0.282086
Target:  5'- gCCCUCGgCCGCCgCCCuggaggccuacuGCGCCCCGc- -3'
miRNA:   3'- aGGGGGCgGGUGG-GGG------------CGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 25364 0.74 0.147921
Target:  5'- aCCaCCCGCUCuuCCCCGCGCCgUGGCg -3'
miRNA:   3'- aGG-GGGCGGGugGGGGCGUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 25447 0.68 0.356659
Target:  5'- -gCCCCGCCCcccggcggcgcGCCCgCCGC-CUUCGGCc -3'
miRNA:   3'- agGGGGCGGG-----------UGGG-GGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 26065 0.68 0.321134
Target:  5'- aCCCCgaCGCgCCGCCgCUGCGCCUCuGCc -3'
miRNA:   3'- aGGGG--GCG-GGUGGgGGCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 26156 0.69 0.314354
Target:  5'- gUCCCCgCGCgaguaCCGCCgCgCCGUGCuCCCGGCg -3'
miRNA:   3'- -AGGGG-GCG-----GGUGG-G-GGCGUG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 27644 0.8 0.052319
Target:  5'- gCCgCCGCCCGCCUUCGCGCCCCc-- -3'
miRNA:   3'- aGGgGGCGGGUGGGGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 27726 0.73 0.16664
Target:  5'- gUCCCCGUCCugCCgCCGCcccuuaagaggGCCCgCAACa -3'
miRNA:   3'- aGGGGGCGGGugGG-GGCG-----------UGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 27854 0.68 0.321134
Target:  5'- cUCUCCCGCCC-Cga-CGCGCUCCGGCu -3'
miRNA:   3'- -AGGGGGCGGGuGgggGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 27895 0.66 0.469879
Target:  5'- gCCCagCCGCCCGCCauguCCCGC-CgCCGGg -3'
miRNA:   3'- aGGG--GGCGGGUGG----GGGCGuGgGGUUg -5'
5153 3' -66.4 NC_001798.1 + 27926 0.75 0.113045
Target:  5'- gUCCCCGCCgccggggucccggCGCCggCCGCGCCCCGGCg -3'
miRNA:   3'- aGGGGGCGG-------------GUGGg-GGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 27982 0.74 0.147921
Target:  5'- gCCCCggCGCuCCAgCCgugCCGCGCCCCGGCg -3'
miRNA:   3'- aGGGG--GCG-GGUgGG---GGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 28236 0.72 0.187456
Target:  5'- gCCgCCGCCUGCCCCC-CGCCgCCGccGCg -3'
miRNA:   3'- aGGgGGCGGGUGGGGGcGUGG-GGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 28285 0.66 0.438961
Target:  5'- gCCCCCuUCCGCCCCaccuggcgcuacggcUGCGCaCCaCGACg -3'
miRNA:   3'- aGGGGGcGGGUGGGG---------------GCGUG-GG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.