miRNA display CGI


Results 101 - 120 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 28365 0.67 0.379262
Target:  5'- cCCCCCGCguccCCGCCCgcggaCGCGCCgCGc- -3'
miRNA:   3'- aGGGGGCG----GGUGGGg----GCGUGGgGUug -5'
5153 3' -66.4 NC_001798.1 + 28420 0.68 0.321134
Target:  5'- aCCCCCugacGCCCcuccgACCCCCuGaCGCCCCu-- -3'
miRNA:   3'- aGGGGG----CGGG-----UGGGGG-C-GUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 28458 0.68 0.321134
Target:  5'- aCCCCCugacGCCCcuccgACCCCCuGaCGCCCCu-- -3'
miRNA:   3'- aGGGGG----CGGG-----UGGGGG-C-GUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 28515 0.7 0.241401
Target:  5'- aCCCCCugacGCCCcuccgACCCCCGUgucuCCCCGcccGCa -3'
miRNA:   3'- aGGGGG----CGGG-----UGGGGGCGu---GGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 28976 0.72 0.183117
Target:  5'- -gCUCCGCCCGCCCCagggggcgGCGCCggCCAACc -3'
miRNA:   3'- agGGGGCGGGUGGGGg-------CGUGG--GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 29524 0.66 0.461177
Target:  5'- uUCCCuCCcUCCGCCCCCGCcgggGCgCgCGGCu -3'
miRNA:   3'- -AGGG-GGcGGGUGGGGGCG----UG-GgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 29618 0.68 0.349337
Target:  5'- -gCCCCGUgugacggucgggCCGCaUUCGCACCCCGGCa -3'
miRNA:   3'- agGGGGCG------------GGUGgGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 29805 0.72 0.191884
Target:  5'- aCCCCgGCCCcgagcgGCCgCCGCGgcagacCCCCGGCa -3'
miRNA:   3'- aGGGGgCGGG------UGGgGGCGU------GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 29986 0.68 0.364087
Target:  5'- aCCCCCGUggGCCgugcgCCGCcCCCCGACc -3'
miRNA:   3'- aGGGGGCGggUGGg----GGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 30201 0.75 0.118993
Target:  5'- -gUCCCGCCuCACgCCCCGCGCCCUc-- -3'
miRNA:   3'- agGGGGCGG-GUG-GGGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 30431 0.72 0.181833
Target:  5'- gCCCCCgGCCCgGCCCCCGgCcgagcgccagggcaGCCCCAc- -3'
miRNA:   3'- aGGGGG-CGGG-UGGGGGC-G--------------UGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 30600 0.71 0.225516
Target:  5'- uUUCCCUGCCugCACCCCUucuGCAUCCCGuGCa -3'
miRNA:   3'- -AGGGGGCGG--GUGGGGG---CGUGGGGU-UG- -5'
5153 3' -66.4 NC_001798.1 + 30870 0.75 0.110582
Target:  5'- gCCCUguCGCCCAccCCCCCGUGgCCCGGCa -3'
miRNA:   3'- aGGGG--GCGGGU--GGGGGCGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31119 0.86 0.018344
Target:  5'- -gUCCCGCCCGCCCCCcgaagaGCGCCCCGGCg -3'
miRNA:   3'- agGGGGCGGGUGGGGG------CGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 31184 0.7 0.263432
Target:  5'- cUCCcagCCCGCCgcgacccgaccggCGCCCCCugGCGCCCCGc- -3'
miRNA:   3'- -AGG---GGGCGG-------------GUGGGGG--CGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 31404 0.73 0.155167
Target:  5'- cCCCCCGCgagaCAgCCCCGCGCggCCCAGg -3'
miRNA:   3'- aGGGGGCGg---GUgGGGGCGUG--GGGUUg -5'
5153 3' -66.4 NC_001798.1 + 31459 0.78 0.076289
Target:  5'- cUCCCCCGCCgucuccgcgcCGCCCCgCGgGCCCCGGg -3'
miRNA:   3'- -AGGGGGCGG----------GUGGGG-GCgUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 31576 0.69 0.294669
Target:  5'- -gCgCCGCgCGCCCCCGCgcggccgucGCCCCGcGCg -3'
miRNA:   3'- agGgGGCGgGUGGGGGCG---------UGGGGU-UG- -5'
5153 3' -66.4 NC_001798.1 + 31622 0.74 0.144414
Target:  5'- -gCCCCGCgCCGCCgCCGC-CCCCGu- -3'
miRNA:   3'- agGGGGCG-GGUGGgGGCGuGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 31679 0.67 0.378493
Target:  5'- gCCgCCCGCCgugccgguggacgCGCaCCgCGCGCCCCGGu -3'
miRNA:   3'- aGG-GGGCGG-------------GUG-GGgGCGUGGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.