miRNA display CGI


Results 41 - 60 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 145539 0.78 0.069023
Target:  5'- gCCCCCGCCCgGCCgCCCGCgucGCgCCGGCg -3'
miRNA:   3'- aGGGGGCGGG-UGG-GGGCG---UGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 145497 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145455 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145413 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145304 0.73 0.170227
Target:  5'- aUCCCCCGCguccuccCCuCCCCCGCGuccuccccuCCCCcGCg -3'
miRNA:   3'- -AGGGGGCG-------GGuGGGGGCGU---------GGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145108 0.71 0.225516
Target:  5'- gCCUgUGaCCCACCCCaCGCcCCCCAGg -3'
miRNA:   3'- aGGGgGC-GGGUGGGG-GCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 142530 0.81 0.040592
Target:  5'- gUCCgCCCGaccacacccCCCGCCCCCGUAuCCCCAACg -3'
miRNA:   3'- -AGG-GGGC---------GGGUGGGGGCGU-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 142009 0.74 0.140984
Target:  5'- uUCCCUCGCgUuCCCaCCGCACCCgGGCc -3'
miRNA:   3'- -AGGGGGCGgGuGGG-GGCGUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 139310 0.68 0.364087
Target:  5'- gUCgCCGcCCCGCgUCCGCAUCgCCGGCg -3'
miRNA:   3'- aGGgGGC-GGGUGgGGGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 138727 0.68 0.342124
Target:  5'- gCCCCgGgCCggcGCgCUCCGCgGCCCCGGCg -3'
miRNA:   3'- aGGGGgCgGG---UG-GGGGCG-UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 138418 0.75 0.113322
Target:  5'- aCCCCgCGCUCgcugucGCUCuuGCGCCCCAACa -3'
miRNA:   3'- aGGGG-GCGGG------UGGGggCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 137980 0.66 0.444034
Target:  5'- gCCCCCGCCUggGCgCgCCGCAgCUCGc- -3'
miRNA:   3'- aGGGGGCGGG--UGgG-GGCGUgGGGUug -5'
5153 3' -66.4 NC_001798.1 + 137936 0.76 0.107112
Target:  5'- cUCCCCCGgCCGCCCgguCCGCcgcgcgcugcucccGCUCCAGCg -3'
miRNA:   3'- -AGGGGGCgGGUGGG---GGCG--------------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 137350 0.67 0.394065
Target:  5'- aUCCCUgcguucgaCGCCCcaGCCCUgguccggCGCACCCCucGGCg -3'
miRNA:   3'- -AGGGG--------GCGGG--UGGGG-------GCGUGGGG--UUG- -5'
5153 3' -66.4 NC_001798.1 + 137257 0.66 0.435597
Target:  5'- cCCUCCGCCaccucgACCagaCUGCGguCCCCGGCg -3'
miRNA:   3'- aGGGGGCGGg-----UGGg--GGCGU--GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 135586 0.7 0.275957
Target:  5'- gCCCgCGCCuCGCCCCCu--CCCUGGCg -3'
miRNA:   3'- aGGGgGCGG-GUGGGGGcguGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 135343 0.68 0.356659
Target:  5'- aCgCgUGCgacgCCugCCCCGCGCUCCGGCa -3'
miRNA:   3'- aGgGgGCG----GGugGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 135200 0.69 0.301122
Target:  5'- gCUCCUGgCCGCCCUCGCggGCCUCGGg -3'
miRNA:   3'- aGGGGGCgGGUGGGGGCG--UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 134799 0.68 0.367088
Target:  5'- gCCCCCggaGCCCugGCCCCCGUcuucgcuuuucugggGCCCgGGu -3'
miRNA:   3'- aGGGGG---CGGG--UGGGGGCG---------------UGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 134523 0.71 0.225516
Target:  5'- gUCCUCCGCCuCGCUCgCCGuCACCaucaCGACg -3'
miRNA:   3'- -AGGGGGCGG-GUGGG-GGC-GUGGg---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.