miRNA display CGI


Results 61 - 80 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 134437 0.69 0.307684
Target:  5'- -gCCCUGUCCGCgcgcgucgCCgaGCACCCCGGCg -3'
miRNA:   3'- agGGGGCGGGUG--------GGggCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 134372 0.67 0.379262
Target:  5'- gCCCgCCGgCCGCuCCUCGCGCCgCCc-- -3'
miRNA:   3'- aGGG-GGCgGGUG-GGGGCGUGG-GGuug -5'
5153 3' -66.4 NC_001798.1 + 134194 0.68 0.335018
Target:  5'- -gCCCCGgCCGCcuCCCCGCuggaGCCCCu-- -3'
miRNA:   3'- agGGGGCgGGUG--GGGGCG----UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 134142 0.73 0.173473
Target:  5'- cUCCCCCgacgucucgGCCCccggggccgucgcgGCCgCCCGCGCCgCGACg -3'
miRNA:   3'- -AGGGGG---------CGGG--------------UGG-GGGCGUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 132169 0.66 0.469879
Target:  5'- gCCCCC-CCCGgacgccCCCCCGgACgCCAc- -3'
miRNA:   3'- aGGGGGcGGGU------GGGGGCgUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 131325 0.7 0.269934
Target:  5'- --aCCCaCCaCGCCgCCCGCGCCCCGGg -3'
miRNA:   3'- aggGGGcGG-GUGG-GGGCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 131064 0.66 0.469879
Target:  5'- gUCaCCgCGCCCACCgCgGCguacacggccGCCgCCAGCa -3'
miRNA:   3'- -AG-GGgGCGGGUGGgGgCG----------UGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 130456 0.67 0.402805
Target:  5'- gCCCCCGgCCACUgCUGCuCCaCCAc- -3'
miRNA:   3'- aGGGGGCgGGUGGgGGCGuGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 129180 0.72 0.183117
Target:  5'- aUCUUCGCCaACCCCCGCcACCCgAACu -3'
miRNA:   3'- aGGGGGCGGgUGGGGGCG-UGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 128913 0.68 0.335018
Target:  5'- -aUCCgGUCCAUCCCCa-ACCCCGGCg -3'
miRNA:   3'- agGGGgCGGGUGGGGGcgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 128830 0.76 0.107904
Target:  5'- -aCCCCGCggACCCCgGCGCCCCcGCg -3'
miRNA:   3'- agGGGGCGggUGGGGgCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 128749 0.68 0.356659
Target:  5'- aCCCUCacgGCUaccugGCCCCCGCcCCCCAGa -3'
miRNA:   3'- aGGGGG---CGGg----UGGGGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 128313 0.73 0.170227
Target:  5'- cCCCCCGUCCGCCgCCGaagccguCGCCCCc-- -3'
miRNA:   3'- aGGGGGCGGGUGGgGGC-------GUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 128051 0.71 0.225516
Target:  5'- aCCCggacugcaGCCCcgguCCCCCGgACCCCGACc -3'
miRNA:   3'- aGGGgg------CGGGu---GGGGGCgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 127971 0.7 0.258207
Target:  5'- gUCCCCgGCCCucucugagGCCucauccggCCCGCcaacCCCCGACa -3'
miRNA:   3'- -AGGGGgCGGG--------UGG--------GGGCGu---GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 127854 0.73 0.158909
Target:  5'- -gCCCCGCCCcGCCCCacccCGCCCCAc- -3'
miRNA:   3'- agGGGGCGGG-UGGGGgc--GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 127781 0.77 0.090574
Target:  5'- -aCCCCGCCCGcgaccccgauaguCCCCCGaagcgGCCCCGACc -3'
miRNA:   3'- agGGGGCGGGU-------------GGGGGCg----UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 127651 0.68 0.342124
Target:  5'- gUCUCCCGCCUcugucacgccaACCCggCCGCGCgCCAc- -3'
miRNA:   3'- -AGGGGGCGGG-----------UGGG--GGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 127426 0.67 0.418187
Target:  5'- cUCCUCGCCUAUCgcugcguUCUGCACCCCGc- -3'
miRNA:   3'- aGGGGGCGGGUGG-------GGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 126490 0.68 0.349337
Target:  5'- gCCCCCgucGCCC-CCCUCGCACaUCCu-- -3'
miRNA:   3'- aGGGGG---CGGGuGGGGGCGUG-GGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.