miRNA display CGI


Results 81 - 100 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 126432 0.7 0.243588
Target:  5'- gCCCUgcggccaagcuaaggCGCCCGCCCCUGCGCagguCCGAg -3'
miRNA:   3'- aGGGG---------------GCGGGUGGGGGCGUGg---GGUUg -5'
5153 3' -66.4 NC_001798.1 + 126405 0.66 0.469879
Target:  5'- gUCgCCGCUCGuCCCCCGagGCCCCc-- -3'
miRNA:   3'- aGGgGGCGGGU-GGGGGCg-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 126311 0.67 0.419007
Target:  5'- gUCUCCggaGCCCGCCCCgGguCCCgCcGCc -3'
miRNA:   3'- -AGGGGg--CGGGUGGGGgCguGGG-GuUG- -5'
5153 3' -66.4 NC_001798.1 + 124161 0.66 0.42477
Target:  5'- gUCCCUGCgUCGCCCCgUGCAUgugguccaauauggCCCAGCg -3'
miRNA:   3'- aGGGGGCG-GGUGGGG-GCGUG--------------GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 124072 0.72 0.196405
Target:  5'- cCCCCCGggaggaggCgGCgCCUGCGCCCCGACg -3'
miRNA:   3'- aGGGGGCg-------GgUGgGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 123811 0.68 0.349337
Target:  5'- cUCCCCC-CCggaggaaACCCCCG-ACCCCGc- -3'
miRNA:   3'- -AGGGGGcGGg------UGGGGGCgUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 123742 0.74 0.137629
Target:  5'- aCCUCCGCagcuaacgCACCCCCGgACCCCGcuGCu -3'
miRNA:   3'- aGGGGGCGg-------GUGGGGGCgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 123420 0.7 0.264017
Target:  5'- -gCCCCGCCgggucaccggggCGCCCCCcccgacgcgcGCGcCCCCGACc -3'
miRNA:   3'- agGGGGCGG------------GUGGGGG----------CGU-GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 123273 0.71 0.225516
Target:  5'- gUUCCaCCGCucacCCACCCCC-C-CCCCAACu -3'
miRNA:   3'- -AGGG-GGCG----GGUGGGGGcGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 122875 0.73 0.17063
Target:  5'- aUCCCCGCCCGCUUcgCCG-ACUCCGACg -3'
miRNA:   3'- aGGGGGCGGGUGGG--GGCgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 122518 0.74 0.131137
Target:  5'- aCCCCUGCgCCACCCgCGC-CCCguGCu -3'
miRNA:   3'- aGGGGGCG-GGUGGGgGCGuGGGguUG- -5'
5153 3' -66.4 NC_001798.1 + 122454 0.73 0.162733
Target:  5'- gCCCCCaccaGCUguCCCCCGCGgCCCAGa -3'
miRNA:   3'- aGGGGG----CGGguGGGGGCGUgGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 121958 0.69 0.288324
Target:  5'- aCCCgCCG-CCACCCgguccgcgCGCGCCCCAAg -3'
miRNA:   3'- aGGG-GGCgGGUGGGg-------GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 121425 0.72 0.201018
Target:  5'- gCCCCCG-UCAUCCCggCGCACCCgGACc -3'
miRNA:   3'- aGGGGGCgGGUGGGG--GCGUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 121266 0.79 0.060873
Target:  5'- gUCCCgCUGUCCGCCCUCGUgcgcggccGCCCCGACg -3'
miRNA:   3'- -AGGG-GGCGGGUGGGGGCG--------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 119716 1.07 0.000462
Target:  5'- uUCCCCCGCCCACCCCCGCACCCCAACc -3'
miRNA:   3'- -AGGGGGCGGGUGGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 119214 0.66 0.43058
Target:  5'- aUCCUCaCGCUCAuCCCCCggcugcucgcgcugaGCGCCCagGACg -3'
miRNA:   3'- -AGGGG-GCGGGU-GGGGG---------------CGUGGGg-UUG- -5'
5153 3' -66.4 NC_001798.1 + 119053 0.7 0.269934
Target:  5'- aCCCCCggacGCCCGgggagcUCCCCG-ACCUCAACg -3'
miRNA:   3'- aGGGGG----CGGGU------GGGGGCgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 118865 0.7 0.251936
Target:  5'- cUCCCCCGUCgACCUCUGCAacggggaUCCCGu- -3'
miRNA:   3'- -AGGGGGCGGgUGGGGGCGU-------GGGGUug -5'
5153 3' -66.4 NC_001798.1 + 118507 0.7 0.252501
Target:  5'- cUUUCCGgCC-CUCCCGCACCCCcGCg -3'
miRNA:   3'- aGGGGGCgGGuGGGGGCGUGGGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.