miRNA display CGI


Results 41 - 60 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 126405 0.66 0.469879
Target:  5'- gUCgCCGCUCGuCCCCCGagGCCCCc-- -3'
miRNA:   3'- aGGgGGCGGGU-GGGGGCg-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 131064 0.66 0.469879
Target:  5'- gUCaCCgCGCCCACCgCgGCguacacggccGCCgCCAGCa -3'
miRNA:   3'- -AG-GGgGCGGGUGGgGgCG----------UGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 3074 0.66 0.469879
Target:  5'- cCCUCCGCCagCGCCUCCaGgAUCCCGcgGCa -3'
miRNA:   3'- aGGGGGCGG--GUGGGGG-CgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 54308 0.66 0.469879
Target:  5'- gCCCCgGaCCUGCuucggagcggaaCCCCGuCGCCCCAcuACg -3'
miRNA:   3'- aGGGGgC-GGGUG------------GGGGC-GUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 132169 0.66 0.469879
Target:  5'- gCCCCC-CCCGgacgccCCCCCGgACgCCAc- -3'
miRNA:   3'- aGGGGGcGGGU------GGGGGCgUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 29524 0.66 0.461177
Target:  5'- uUCCCuCCcUCCGCCCCCGCcgggGCgCgCGGCu -3'
miRNA:   3'- -AGGG-GGcGGGUGGGGGCG----UG-GgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24374 0.66 0.461177
Target:  5'- gCCCgCgggaaGCCCGCCgCCGCcgccGCCCCGu- -3'
miRNA:   3'- aGGGgG-----CGGGUGGgGGCG----UGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 81817 0.66 0.444034
Target:  5'- cUCCCCGCCCcgguCgCCCCGuCGCCgCuuccGCg -3'
miRNA:   3'- aGGGGGCGGGu---G-GGGGC-GUGGgGu---UG- -5'
5153 3' -66.4 NC_001798.1 + 137980 0.66 0.444034
Target:  5'- gCCCCCGCCUggGCgCgCCGCAgCUCGc- -3'
miRNA:   3'- aGGGGGCGGG--UGgG-GGCGUgGGGUug -5'
5153 3' -66.4 NC_001798.1 + 153212 0.66 0.444034
Target:  5'- aCCCuagaCCGCCCGacggCCCGgGCCCgCGGCg -3'
miRNA:   3'- aGGG----GGCGGGUgg--GGGCgUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 82699 0.66 0.452561
Target:  5'- aCUCCgCGCCC-CCaCCCGCAUCgCuGCu -3'
miRNA:   3'- aGGGG-GCGGGuGG-GGGCGUGGgGuUG- -5'
5153 3' -66.4 NC_001798.1 + 4 0.66 0.452561
Target:  5'- -gCCCCGCCUcuuuuCCCCCGgGgagucaacCCCCGGg -3'
miRNA:   3'- agGGGGCGGGu----GGGGGCgU--------GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 15130 0.66 0.452561
Target:  5'- gUCCUcgggggguUCGCCguCCCCgGCGCCCUcaAACu -3'
miRNA:   3'- -AGGG--------GGCGGguGGGGgCGUGGGG--UUG- -5'
5153 3' -66.4 NC_001798.1 + 48793 0.66 0.452561
Target:  5'- aCCCCCGgCgAUUCCCuucGCgaggGCCCCGGCc -3'
miRNA:   3'- aGGGGGCgGgUGGGGG---CG----UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 65999 0.66 0.452561
Target:  5'- uUCCCaCCa-CgACCCCUGuCGCCCCAGg -3'
miRNA:   3'- -AGGG-GGcgGgUGGGGGC-GUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 76572 0.66 0.452561
Target:  5'- gUCCCgGCgaCCGgCCCCGCGCCguacgUCGACg -3'
miRNA:   3'- aGGGGgCG--GGUgGGGGCGUGG-----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 84428 0.66 0.452561
Target:  5'- --gCCCGacucCCCACCCCCGC-CgCgCAGCg -3'
miRNA:   3'- aggGGGC----GGGUGGGGGCGuG-GgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 100157 0.66 0.452561
Target:  5'- aCCCCaaCGCCauCGCCUCCGCcACCgucggCCGGCg -3'
miRNA:   3'- aGGGG--GCGG--GUGGGGGCG-UGG-----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24924 0.66 0.461177
Target:  5'- gCCCgCGCCUgcugagcuccGCCgCCGCGCCgCCGc- -3'
miRNA:   3'- aGGGgGCGGG----------UGGgGGCGUGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 110760 0.66 0.461177
Target:  5'- uUCCCCC-CCCAuagUCCCCGUAUaggcauaCAACg -3'
miRNA:   3'- -AGGGGGcGGGU---GGGGGCGUGgg-----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.