Results 81 - 100 of 402 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 67129 | 0.66 | 0.435597 |
Target: 5'- cUUCUCgGCgCCGCCCCUGgCAUCgCGACg -3' miRNA: 3'- -AGGGGgCG-GGUGGGGGC-GUGGgGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 52126 | 0.66 | 0.435597 |
Target: 5'- cUCgCCCGCUUcaACCCCgGCGCCgUCAAa -3' miRNA: 3'- -AGgGGGCGGG--UGGGGgCGUGG-GGUUg -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 2071 | 0.66 | 0.435597 |
Target: 5'- gCCCgCCGCgcucggcggaCCACUccggggggggCCCGC-CCCCGGCg -3' miRNA: 3'- aGGG-GGCG----------GGUGG----------GGGCGuGGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 85480 | 0.66 | 0.435597 |
Target: 5'- uUCCUCUGCgCCAagugCCUgggCGCGCCCCAcuGCg -3' miRNA: 3'- -AGGGGGCG-GGUg---GGG---GCGUGGGGU--UG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 44814 | 0.66 | 0.435597 |
Target: 5'- gUCUUCCGUCCccaucGCCCCUGCgaACCCgGAg -3' miRNA: 3'- -AGGGGGCGGG-----UGGGGGCG--UGGGgUUg -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 32040 | 0.66 | 0.43058 |
Target: 5'- gCCacgggCCGCUCGCCCcggcguccgcgggcgCCGCGCCCCcgucGGCg -3' miRNA: 3'- aGGg----GGCGGGUGGG---------------GGCGUGGGG----UUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 119214 | 0.66 | 0.43058 |
Target: 5'- aUCCUCaCGCUCAuCCCCCggcugcucgcgcugaGCGCCCagGACg -3' miRNA: 3'- -AGGGG-GCGGGU-GGGGG---------------CGUGGGg-UUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 19495 | 0.66 | 0.441493 |
Target: 5'- gCCCCCGCuggCCguuggcgacgagugGCCUCCGuCAUCCCAc- -3' miRNA: 3'- aGGGGGCG---GG--------------UGGGGGC-GUGGGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 101513 | 0.66 | 0.444034 |
Target: 5'- gCUCCUaGCCCcCCCCCcuCACCCCu-- -3' miRNA: 3'- aGGGGG-CGGGuGGGGGc-GUGGGGuug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 55676 | 0.66 | 0.444034 |
Target: 5'- gUCUCCGUUCACCCaCCaGUAaCCCGACg -3' miRNA: 3'- aGGGGGCGGGUGGG-GG-CGUgGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 153212 | 0.66 | 0.444034 |
Target: 5'- aCCCuagaCCGCCCGacggCCCGgGCCCgCGGCg -3' miRNA: 3'- aGGG----GGCGGGUgg--GGGCgUGGG-GUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 137980 | 0.66 | 0.444034 |
Target: 5'- gCCCCCGCCUggGCgCgCCGCAgCUCGc- -3' miRNA: 3'- aGGGGGCGGG--UGgG-GGCGUgGGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 81817 | 0.66 | 0.444034 |
Target: 5'- cUCCCCGCCCcgguCgCCCCGuCGCCgCuuccGCg -3' miRNA: 3'- aGGGGGCGGGu---G-GGGGC-GUGGgGu---UG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 67900 | 0.66 | 0.444034 |
Target: 5'- aCCCagaCCGCCCGCgUUgGCuuuuauCCCCGGCa -3' miRNA: 3'- aGGG---GGCGGGUGgGGgCGu-----GGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 54886 | 0.66 | 0.444034 |
Target: 5'- cCCCCCGCCC-CCUCCGaggacgcagAUUCCAu- -3' miRNA: 3'- aGGGGGCGGGuGGGGGCg--------UGGGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 44551 | 0.66 | 0.444034 |
Target: 5'- aCCCgaaaugaaUCGCCauuuagccCCCCCGCAUCCCggUa -3' miRNA: 3'- aGGG--------GGCGGgu------GGGGGCGUGGGGuuG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 58880 | 0.66 | 0.444034 |
Target: 5'- gUCCCggGCCCggaACCCCCggagGCGCgCCGGCc -3' miRNA: 3'- -AGGGggCGGG---UGGGGG----CGUGgGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 44515 | 0.66 | 0.444034 |
Target: 5'- gUCa--CGCCCACUUCCGU-CCCCAAUa -3' miRNA: 3'- -AGgggGCGGGUGGGGGCGuGGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 1334 | 0.66 | 0.444034 |
Target: 5'- aCUCCCGCCgCGgCCCgCGCAgCUCCGc- -3' miRNA: 3'- aGGGGGCGG-GUgGGG-GCGU-GGGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 74927 | 0.66 | 0.444034 |
Target: 5'- gCCgCCgGCCCACCuggaCCC-CACCguCCAGCg -3' miRNA: 3'- aGG-GGgCGGGUGG----GGGcGUGG--GGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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