Results 101 - 120 of 402 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 126311 | 0.67 | 0.419007 |
Target: 5'- gUCUCCggaGCCCGCCCCgGguCCCgCcGCc -3' miRNA: 3'- -AGGGGg--CGGGUGGGGgCguGGG-GuUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 110922 | 0.67 | 0.419007 |
Target: 5'- gCCCCCGCCgGCCCgCGgucaaACgCgGACa -3' miRNA: 3'- aGGGGGCGGgUGGGgGCg----UGgGgUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 127426 | 0.67 | 0.418187 |
Target: 5'- cUCCUCGCCUAUCgcugcguUCUGCACCCCGc- -3' miRNA: 3'- aGGGGGCGGGUGG-------GGGCGUGGGGUug -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 5871 | 0.67 | 0.410856 |
Target: 5'- -gCCCUGCCCgggGCCCgCGuCAUCCCGc- -3' miRNA: 3'- agGGGGCGGG---UGGGgGC-GUGGGGUug -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 85309 | 0.67 | 0.410856 |
Target: 5'- gCCCgCgGCCCGCCCgCagACCCCAcgGCa -3' miRNA: 3'- aGGG-GgCGGGUGGGgGcgUGGGGU--UG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 85480 | 0.66 | 0.435597 |
Target: 5'- uUCCUCUGCgCCAagugCCUgggCGCGCCCCAcuGCg -3' miRNA: 3'- -AGGGGGCG-GGUg---GGG---GCGUGGGGU--UG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 2071 | 0.66 | 0.435597 |
Target: 5'- gCCCgCCGCgcucggcggaCCACUccggggggggCCCGC-CCCCGGCg -3' miRNA: 3'- aGGG-GGCG----------GGUGG----------GGGCGuGGGGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 44551 | 0.66 | 0.444034 |
Target: 5'- aCCCgaaaugaaUCGCCauuuagccCCCCCGCAUCCCggUa -3' miRNA: 3'- aGGG--------GGCGGgu------GGGGGCGUGGGGuuG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 58880 | 0.66 | 0.444034 |
Target: 5'- gUCCCggGCCCggaACCCCCggagGCGCgCCGGCc -3' miRNA: 3'- -AGGGggCGGG---UGGGGG----CGUGgGGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 44515 | 0.66 | 0.444034 |
Target: 5'- gUCa--CGCCCACUUCCGU-CCCCAAUa -3' miRNA: 3'- -AGgggGCGGGUGGGGGCGuGGGGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 1334 | 0.66 | 0.444034 |
Target: 5'- aCUCCCGCCgCGgCCCgCGCAgCUCCGc- -3' miRNA: 3'- aGGGGGCGG-GUgGGG-GCGU-GGGGUug -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 74927 | 0.66 | 0.444034 |
Target: 5'- gCCgCCgGCCCACCuggaCCC-CACCguCCAGCg -3' miRNA: 3'- aGG-GGgCGGGUGG----GGGcGUGG--GGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 55676 | 0.66 | 0.444034 |
Target: 5'- gUCUCCGUUCACCCaCCaGUAaCCCGACg -3' miRNA: 3'- aGGGGGCGGGUGGG-GG-CGUgGGGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 101513 | 0.66 | 0.444034 |
Target: 5'- gCUCCUaGCCCcCCCCCcuCACCCCu-- -3' miRNA: 3'- aGGGGG-CGGGuGGGGGc-GUGGGGuug -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 19495 | 0.66 | 0.441493 |
Target: 5'- gCCCCCGCuggCCguuggcgacgagugGCCUCCGuCAUCCCAc- -3' miRNA: 3'- aGGGGGCG---GG--------------UGGGGGC-GUGGGGUug -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 28285 | 0.66 | 0.438961 |
Target: 5'- gCCCCCuUCCGCCCCaccuggcgcuacggcUGCGCaCCaCGACg -3' miRNA: 3'- aGGGGGcGGGUGGGG---------------GCGUG-GG-GUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 154336 | 0.66 | 0.435597 |
Target: 5'- aCUCCCGCCCcgccucuuuuCCCCCGgGgagucaacCCCCGGg -3' miRNA: 3'- aGGGGGCGGGu---------GGGGGCgU--------GGGGUUg -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 137257 | 0.66 | 0.435597 |
Target: 5'- cCCUCCGCCaccucgACCagaCUGCGguCCCCGGCg -3' miRNA: 3'- aGGGGGCGGg-----UGGg--GGCGU--GGGGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 67129 | 0.66 | 0.435597 |
Target: 5'- cUUCUCgGCgCCGCCCCUGgCAUCgCGACg -3' miRNA: 3'- -AGGGGgCG-GGUGGGGGC-GUGGgGUUG- -5' |
|||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 52126 | 0.66 | 0.435597 |
Target: 5'- cUCgCCCGCUUcaACCCCgGCGCCgUCAAa -3' miRNA: 3'- -AGgGGGCGGG--UGGGGgCGUGG-GGUUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home