miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5154 5' -52.3 NC_001798.1 + 2587 0.68 0.941233
Target:  5'- cGUCCGcGCGGCUCuUCUUCGggGGGCGCg -3'
miRNA:   3'- -CAGGU-CGUUGAGcGGAGGCa-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 3125 0.68 0.936317
Target:  5'- -gCCAcGCGGCcCGCCUCCGc--GCGCc -3'
miRNA:   3'- caGGU-CGUUGaGCGGAGGCauuUGUG- -5'
5154 5' -52.3 NC_001798.1 + 3268 0.68 0.945896
Target:  5'- -gCCGGCGggcaccgcgcGCUCGUCggCCGgcGACGCc -3'
miRNA:   3'- caGGUCGU----------UGAGCGGa-GGCauUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 16439 0.71 0.815308
Target:  5'- --aCGGCGGCUCGCCgCCGc-GACACc -3'
miRNA:   3'- cagGUCGUUGAGCGGaGGCauUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 24411 0.68 0.950309
Target:  5'- cGUCggCGGCGGCgUCGCCggCCGacGAGCGCg -3'
miRNA:   3'- -CAG--GUCGUUG-AGCGGa-GGCa-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 31878 0.66 0.97714
Target:  5'- --gCGGCGGCcCGCCcCCGgaagAGGCGCg -3'
miRNA:   3'- cagGUCGUUGaGCGGaGGCa---UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 36118 0.66 0.97714
Target:  5'- -cCCGGCugcguCUCGCCgcgaucccgCCGgugGGGCGCg -3'
miRNA:   3'- caGGUCGuu---GAGCGGa--------GGCa--UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 41367 0.67 0.958399
Target:  5'- -cCCGGCGGCUcauggCGCCggggauggCCGggagGGACACg -3'
miRNA:   3'- caGGUCGUUGA-----GCGGa-------GGCa---UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 41802 0.7 0.887853
Target:  5'- gGUCCGggccgucgcGCGACUUGCCcugCCGUGcuugaAGCGCa -3'
miRNA:   3'- -CAGGU---------CGUUGAGCGGa--GGCAU-----UUGUG- -5'
5154 5' -52.3 NC_001798.1 + 43104 0.7 0.865625
Target:  5'- cGUCC-GCGACcacggUCGCUUCCGgcgGGCGCg -3'
miRNA:   3'- -CAGGuCGUUG-----AGCGGAGGCau-UUGUG- -5'
5154 5' -52.3 NC_001798.1 + 59669 0.67 0.962084
Target:  5'- ---gGGCGACUCGgCUCgCGUGGGgGCg -3'
miRNA:   3'- caggUCGUUGAGCgGAG-GCAUUUgUG- -5'
5154 5' -52.3 NC_001798.1 + 71300 0.81 0.33821
Target:  5'- gGUCCagaacAGCAACUCGcCCUCCGUGgugaucAACACg -3'
miRNA:   3'- -CAGG-----UCGUUGAGC-GGAGGCAU------UUGUG- -5'
5154 5' -52.3 NC_001798.1 + 72256 0.66 0.979296
Target:  5'- gGUCCAGCugcCUCccccccaGCCUCCcgagGUGGGCAg -3'
miRNA:   3'- -CAGGUCGuu-GAG-------CGGAGG----CAUUUGUg -5'
5154 5' -52.3 NC_001798.1 + 76686 0.66 0.979526
Target:  5'- --aCGGCGgaGCUCG-CUCCGgaGGCGCg -3'
miRNA:   3'- cagGUCGU--UGAGCgGAGGCauUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 78454 0.72 0.806251
Target:  5'- -gCCgAGUAugUCGCCUUCGUGacccggcagGACACg -3'
miRNA:   3'- caGG-UCGUugAGCGGAGGCAU---------UUGUG- -5'
5154 5' -52.3 NC_001798.1 + 81549 0.69 0.901476
Target:  5'- -gCCGGCAGCUaCGgCUCgCG-AAACACg -3'
miRNA:   3'- caGGUCGUUGA-GCgGAG-GCaUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 86095 0.66 0.981721
Target:  5'- -cCCGGCuGCgCGCCgCCGcGGACGCc -3'
miRNA:   3'- caGGUCGuUGaGCGGaGGCaUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 87964 0.66 0.975614
Target:  5'- -aCCAGCAGCUugcggggcuuggacgCGCCUCCcgggggGUcgGCAUg -3'
miRNA:   3'- caGGUCGUUGA---------------GCGGAGG------CAuuUGUG- -5'
5154 5' -52.3 NC_001798.1 + 90680 0.67 0.965536
Target:  5'- -cCCGGCGACUCGCgCagggCCGccgccAGGCGCu -3'
miRNA:   3'- caGGUCGUUGAGCG-Ga---GGCa----UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 93139 0.69 0.920041
Target:  5'- --gCAGCGcCUgGCCUCgGUGAugGCg -3'
miRNA:   3'- cagGUCGUuGAgCGGAGgCAUUugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.