Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5154 | 5' | -52.3 | NC_001798.1 | + | 2587 | 0.68 | 0.941233 |
Target: 5'- cGUCCGcGCGGCUCuUCUUCGggGGGCGCg -3' miRNA: 3'- -CAGGU-CGUUGAGcGGAGGCa-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 110643 | 0.68 | 0.941233 |
Target: 5'- cGUCCAcGCccaacccaaccGACUC-CCUCCGUGucCGCg -3' miRNA: 3'- -CAGGU-CG-----------UUGAGcGGAGGCAUuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 3125 | 0.68 | 0.936317 |
Target: 5'- -gCCAcGCGGCcCGCCUCCGc--GCGCc -3' miRNA: 3'- caGGU-CGUUGaGCGGAGGCauuUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 93139 | 0.69 | 0.920041 |
Target: 5'- --gCAGCGcCUgGCCUCgGUGAugGCg -3' miRNA: 3'- cagGUCGUuGAgCGGAGgCAUUugUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 120710 | 0.69 | 0.907917 |
Target: 5'- cGUCCGGCGAacggCGCCguccaUCGUGAuaaACACg -3' miRNA: 3'- -CAGGUCGUUga--GCGGa----GGCAUU---UGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 81549 | 0.69 | 0.901476 |
Target: 5'- -gCCGGCAGCUaCGgCUCgCG-AAACACg -3' miRNA: 3'- caGGUCGUUGA-GCgGAG-GCaUUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 110414 | 0.7 | 0.887853 |
Target: 5'- uUCCAGCGACgUGCCgUCCGUGGc--- -3' miRNA: 3'- cAGGUCGUUGaGCGG-AGGCAUUugug -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 41802 | 0.7 | 0.887853 |
Target: 5'- gGUCCGggccgucgcGCGACUUGCCcugCCGUGcuugaAGCGCa -3' miRNA: 3'- -CAGGU---------CGUUGAGCGGa--GGCAU-----UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 43104 | 0.7 | 0.865625 |
Target: 5'- cGUCC-GCGACcacggUCGCUUCCGgcgGGCGCg -3' miRNA: 3'- -CAGGuCGUUG-----AGCGGAGGCau-UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 16439 | 0.71 | 0.815308 |
Target: 5'- --aCGGCGGCUCGCCgCCGc-GACACc -3' miRNA: 3'- cagGUCGUUGAGCGGaGGCauUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 109431 | 0.72 | 0.806251 |
Target: 5'- -cCCGGCGGCcCGCCUgCGgcuggAGGCGCg -3' miRNA: 3'- caGGUCGUUGaGCGGAgGCa----UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 78454 | 0.72 | 0.806251 |
Target: 5'- -gCCgAGUAugUCGCCUUCGUGacccggcagGACACg -3' miRNA: 3'- caGG-UCGUugAGCGGAGGCAU---------UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 141157 | 0.73 | 0.758627 |
Target: 5'- -aCCAGCGAC-CGCuCUCCGgggGAGCGu -3' miRNA: 3'- caGGUCGUUGaGCG-GAGGCa--UUUGUg -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 114544 | 0.73 | 0.755662 |
Target: 5'- aUCCAGCAGCUCGCgCgcaacguccaggCCGUccugggggcguuuGAGCGCg -3' miRNA: 3'- cAGGUCGUUGAGCG-Ga-----------GGCA-------------UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 113781 | 0.73 | 0.747705 |
Target: 5'- ---gGGCAGCUCGCCcCCGUGccuguugGGCACa -3' miRNA: 3'- caggUCGUUGAGCGGaGGCAU-------UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 71300 | 0.81 | 0.33821 |
Target: 5'- gGUCCagaacAGCAACUCGcCCUCCGUGgugaucAACACg -3' miRNA: 3'- -CAGG-----UCGUUGAGC-GGAGGCAU------UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 119129 | 1.09 | 0.005673 |
Target: 5'- cGUCCAGCAACUCGCCUCCGUAAACACc -3' miRNA: 3'- -CAGGUCGUUGAGCGGAGGCAUUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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