miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5155 3' -51.1 NC_001798.1 + 36312 0.66 0.994534
Target:  5'- cGGCGGGgCgCGGgccGGGGCCgGGGCUCg -3'
miRNA:   3'- -CCGUCCaGgGUUa--UUUUGGgUCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 2613 0.66 0.994534
Target:  5'- cGCGGGgcgccgCCCGGcGGcGCCCuGGCCg -3'
miRNA:   3'- cCGUCCa-----GGGUUaUUuUGGGuCUGGg -5'
5155 3' -51.1 NC_001798.1 + 58474 0.66 0.994534
Target:  5'- gGGCcgugcGGcCCCGuc---GCCgCAGACCCg -3'
miRNA:   3'- -CCGu----CCaGGGUuauuuUGG-GUCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 124277 0.66 0.994534
Target:  5'- cGGCAGGcgaCCCGcc---GCCCGcgcaucacGGCCCa -3'
miRNA:   3'- -CCGUCCa--GGGUuauuuUGGGU--------CUGGG- -5'
5155 3' -51.1 NC_001798.1 + 1738 0.66 0.994534
Target:  5'- cGCAGGUCCCGc----GCCgCcGGCCa -3'
miRNA:   3'- cCGUCCAGGGUuauuuUGG-GuCUGGg -5'
5155 3' -51.1 NC_001798.1 + 2310 0.66 0.994534
Target:  5'- cGCGGGUCgaaC-AUGAGGgCCGGGCgCCa -3'
miRNA:   3'- cCGUCCAGg--GuUAUUUUgGGUCUG-GG- -5'
5155 3' -51.1 NC_001798.1 + 10501 0.66 0.994534
Target:  5'- -cCAGGgCCCcGUAGAugaCCAGACUCu -3'
miRNA:   3'- ccGUCCaGGGuUAUUUug-GGUCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 21974 0.66 0.994534
Target:  5'- cGCGGGcCCCGGgcaGGGCgCCAGcGCUCg -3'
miRNA:   3'- cCGUCCaGGGUUau-UUUG-GGUC-UGGG- -5'
5155 3' -51.1 NC_001798.1 + 49890 0.66 0.994534
Target:  5'- cGCccGUCCUGAgggcaaCCAGGCCCg -3'
miRNA:   3'- cCGucCAGGGUUauuuugGGUCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 75850 0.66 0.994534
Target:  5'- aGGCGcuGG-CCCAGUuu-GCCCGGGgCg -3'
miRNA:   3'- -CCGU--CCaGGGUUAuuuUGGGUCUgGg -5'
5155 3' -51.1 NC_001798.1 + 126410 0.66 0.994534
Target:  5'- cGCucGUCCCcc-GAGGCCCccGGCCCu -3'
miRNA:   3'- cCGucCAGGGuuaUUUUGGGu-CUGGG- -5'
5155 3' -51.1 NC_001798.1 + 95389 0.66 0.994534
Target:  5'- cGGC-GGUCgCCAgcagcguguuuGUGgcgaccgucaaGAGCCUGGGCCCc -3'
miRNA:   3'- -CCGuCCAG-GGU-----------UAU-----------UUUGGGUCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 109175 0.66 0.994452
Target:  5'- cGCGGG-CCUAugcggaguuuuugGgggAGGACCCGGGCuCCg -3'
miRNA:   3'- cCGUCCaGGGU-------------Ua--UUUUGGGUCUG-GG- -5'
5155 3' -51.1 NC_001798.1 + 30191 0.66 0.9942
Target:  5'- cGGCgcggGGGUCCCGccucacgcCCCGcGCCCu -3'
miRNA:   3'- -CCG----UCCAGGGUuauuuu--GGGUcUGGG- -5'
5155 3' -51.1 NC_001798.1 + 101706 0.66 0.994027
Target:  5'- aGCGGGacCCCAucaucuGUGAcacaaacagaucggcGGCCCGGGCCg -3'
miRNA:   3'- cCGUCCa-GGGU------UAUU---------------UUGGGUCUGGg -5'
5155 3' -51.1 NC_001798.1 + 35454 0.66 0.993669
Target:  5'- uGGCGccgcGG-CCCGucugcuGGCCCGcGGCCCg -3'
miRNA:   3'- -CCGU----CCaGGGUuauu--UUGGGU-CUGGG- -5'
5155 3' -51.1 NC_001798.1 + 84333 0.66 0.993669
Target:  5'- cGCAGGacguaCUCGAUcgggAAGGCCUcgucGGACCCa -3'
miRNA:   3'- cCGUCCa----GGGUUA----UUUUGGG----UCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 76997 0.66 0.993669
Target:  5'- cGGgAGG-CCCuggAAcACCC-GACCCc -3'
miRNA:   3'- -CCgUCCaGGGuuaUUuUGGGuCUGGG- -5'
5155 3' -51.1 NC_001798.1 + 74727 0.66 0.993669
Target:  5'- gGGCAGcagCCCuggagGGGACCCc-GCCCg -3'
miRNA:   3'- -CCGUCca-GGGuua--UUUUGGGucUGGG- -5'
5155 3' -51.1 NC_001798.1 + 69080 0.66 0.993669
Target:  5'- cGCAGccgcUCUCGGccc-GCCCGGACCCc -3'
miRNA:   3'- cCGUCc---AGGGUUauuuUGGGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.