miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 104729 0.67 0.993051
Target:  5'- cGGUacuGCGGGCGUCcGCU-CUcgUCGCc -3'
miRNA:   3'- aCCGg--UGCCUGUAGuUGAuGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 97643 0.67 0.993996
Target:  5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3'
miRNA:   3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 149954 0.67 0.993996
Target:  5'- cGGCCugGGACGacggaGACgccgACgggggCGCg -3'
miRNA:   3'- aCCGGugCCUGUag---UUGa---UGaaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 71603 0.67 0.993996
Target:  5'- cGGCCuguCGGGCGgcguccUCAGCcagacGCUggCGCg -3'
miRNA:   3'- aCCGGu--GCCUGU------AGUUGa----UGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 35599 0.67 0.993051
Target:  5'- cGGCCGCGGGCucCGGggGCUc-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuaGUUgaUGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 68990 0.67 0.993051
Target:  5'- gGGCC-CGGACcgccUCGGCgGCg-UCGCg -3'
miRNA:   3'- aCCGGuGCCUGu---AGUUGaUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 92330 0.67 0.991992
Target:  5'- cGGCgaCGCGGACGUCGcCg----UCGCg -3'
miRNA:   3'- aCCG--GUGCCUGUAGUuGaugaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 76195 0.67 0.991992
Target:  5'- cGGCCGCGGuCGUgcccauggucCAGUUGCUggaaUCGCu -3'
miRNA:   3'- aCCGGUGCCuGUA----------GUUGAUGAa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 122475 0.67 0.993996
Target:  5'- cGGCC-CaGACGgc-GCUGCUgcgUCGCu -3'
miRNA:   3'- aCCGGuGcCUGUaguUGAUGAa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 39823 0.67 0.994834
Target:  5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3'
miRNA:   3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 28594 0.67 0.994834
Target:  5'- gUGGCCugGGAgA-CGGCcGCg--CGCc -3'
miRNA:   3'- -ACCGGugCCUgUaGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 24215 0.67 0.990809
Target:  5'- gUGGCCAUGaGCcgCcGCUACgaccgCGCg -3'
miRNA:   3'- -ACCGGUGCcUGuaGuUGAUGaaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 80684 0.66 0.997726
Target:  5'- cUGGCCGCGGuGCuccUCGGC-GCgcccgUCGUg -3'
miRNA:   3'- -ACCGGUGCC-UGu--AGUUGaUGaa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 25703 0.66 0.997726
Target:  5'- cGGCCGCcuGGGCGggCAACUggACcggCGCc -3'
miRNA:   3'- aCCGGUG--CCUGUa-GUUGA--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 44326 0.66 0.997603
Target:  5'- aUGGCCACGGugAgagccaugaugaugUUAGCguggagCGCa -3'
miRNA:   3'- -ACCGGUGCCugU--------------AGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 137985 0.66 0.996797
Target:  5'- -cGCCugGGcgcGCcgCAGCUcGCggUCGCg -3'
miRNA:   3'- acCGGugCC---UGuaGUUGA-UGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 133077 0.66 0.996797
Target:  5'- cGGCCgcacGCGGuuCAUCuaccugguGCUGCUggaggccugucUUCGCg -3'
miRNA:   3'- aCCGG----UGCCu-GUAGu-------UGAUGA-----------AAGCG- -5'
5156 5' -49.9 NC_001798.1 + 103851 0.66 0.996226
Target:  5'- aGGCCACGGACAgguACUGg------ -3'
miRNA:   3'- aCCGGUGCCUGUaguUGAUgaaagcg -5'
5156 5' -49.9 NC_001798.1 + 17969 0.66 0.997294
Target:  5'- aGGUC-CGGACGUCGggggggGCUGCg--CGg -3'
miRNA:   3'- aCCGGuGCCUGUAGU------UGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 136587 0.66 0.995362
Target:  5'- aGGCCACacaguccgugcgggGGACGggcccgggCAACUGCaa-CGCa -3'
miRNA:   3'- aCCGGUG--------------CCUGUa-------GUUGAUGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.