Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5156 | 5' | -49.9 | NC_001798.1 | + | 66226 | 0.68 | 0.988032 |
Target: 5'- gGGCCA-GGAuCAUUAGCUggGCcucgugUUCGCg -3' miRNA: 3'- aCCGGUgCCU-GUAGUUGA--UGa-----AAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 64863 | 0.66 | 0.997294 |
Target: 5'- cGGCC-CGGACAU--GCUGCgcuuaaagUgGCu -3' miRNA: 3'- aCCGGuGCCUGUAguUGAUGaa------AgCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 62539 | 0.69 | 0.978265 |
Target: 5'- gGGUCGCGGaACAccgCGGCUAUg-UCGCc -3' miRNA: 3'- aCCGGUGCC-UGUa--GUUGAUGaaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 54806 | 0.68 | 0.989492 |
Target: 5'- aUGcCCGCGGGCGUCGG--GCUUggCGCc -3' miRNA: 3'- -ACcGGUGCCUGUAGUUgaUGAAa-GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 53245 | 0.71 | 0.94307 |
Target: 5'- cGGCCGUGGGCGUC--CUGCggcagCGCg -3' miRNA: 3'- aCCGGUGCCUGUAGuuGAUGaaa--GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 50373 | 0.69 | 0.970108 |
Target: 5'- -uGCCAUGGGCAUUGACgACUUUgGg -3' miRNA: 3'- acCGGUGCCUGUAGUUGaUGAAAgCg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 49377 | 0.68 | 0.988032 |
Target: 5'- aGGCCAUGGcGCAguuuuuccgcggUgAGCUGCgggCGCg -3' miRNA: 3'- aCCGGUGCC-UGU------------AgUUGAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 48337 | 0.66 | 0.996226 |
Target: 5'- cGGCgCA-GGACGUCGAC-GCgacCGCg -3' miRNA: 3'- aCCG-GUgCCUGUAGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 45277 | 0.76 | 0.74064 |
Target: 5'- gGGCCGCGGACAagUCGGCggACgugcUCGUc -3' miRNA: 3'- aCCGGUGCCUGU--AGUUGa-UGaa--AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 45007 | 0.77 | 0.678333 |
Target: 5'- aGGCCcugGCGGugGUCAAUgcGCUUUUGCc -3' miRNA: 3'- aCCGG---UGCCugUAGUUGa-UGAAAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 44326 | 0.66 | 0.997603 |
Target: 5'- aUGGCCACGGugAgagccaugaugaugUUAGCguggagCGCa -3' miRNA: 3'- -ACCGGUGCCugU--------------AGUUGaugaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 43264 | 0.66 | 0.995574 |
Target: 5'- -cGCCGgGGGCGUCGugcccuGCUGCUccgUgGCg -3' miRNA: 3'- acCGGUgCCUGUAGU------UGAUGAa--AgCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 43037 | 0.67 | 0.994834 |
Target: 5'- gGGCCcCGGGCG-CAAaUGCgg-CGCg -3' miRNA: 3'- aCCGGuGCCUGUaGUUgAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 42829 | 0.68 | 0.984647 |
Target: 5'- gGGCCGCGGGaaaCAACaGCUgaacCGCc -3' miRNA: 3'- aCCGGUGCCUguaGUUGaUGAaa--GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 41875 | 0.68 | 0.989492 |
Target: 5'- cGGCCGgGGA--UCAGCUGCa---GCa -3' miRNA: 3'- aCCGGUgCCUguAGUUGAUGaaagCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 39823 | 0.67 | 0.994834 |
Target: 5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3' miRNA: 3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 39495 | 0.74 | 0.835189 |
Target: 5'- gUGGCCGCGGGCccccggagacGUCgAGCUGCUccccucCGCg -3' miRNA: 3'- -ACCGGUGCCUG----------UAG-UUGAUGAaa----GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 36044 | 0.74 | 0.81488 |
Target: 5'- gUGGCgGCGGugGUCGgcgugcugccggagGCUGCgggCGCg -3' miRNA: 3'- -ACCGgUGCCugUAGU--------------UGAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 35599 | 0.67 | 0.993051 |
Target: 5'- cGGCCGCGGGCucCGGggGCUc-CGCa -3' miRNA: 3'- aCCGGUGCCUGuaGUUgaUGAaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 34309 | 0.66 | 0.997726 |
Target: 5'- uUGGCuCGCGGGCGgugCGGCUGaccugccugccCUUUCu- -3' miRNA: 3'- -ACCG-GUGCCUGUa--GUUGAU-----------GAAAGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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