Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5156 | 5' | -49.9 | NC_001798.1 | + | 117631 | 1.12 | 0.007314 |
Target: 5'- gUGGCCACGGACAUCAACUACUUUCGCc -3' miRNA: 3'- -ACCGGUGCCUGUAGUUGAUGAAAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 45007 | 0.77 | 0.678333 |
Target: 5'- aGGCCcugGCGGugGUCAAUgcGCUUUUGCc -3' miRNA: 3'- aCCGG---UGCCugUAGUUGa-UGAAAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 111815 | 0.76 | 0.730451 |
Target: 5'- cGGUCGCGGGCGUCcAGggGCUggCGCg -3' miRNA: 3'- aCCGGUGCCUGUAG-UUgaUGAaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 45277 | 0.76 | 0.74064 |
Target: 5'- gGGCCGCGGACAagUCGGCggACgugcUCGUc -3' miRNA: 3'- aCCGGUGCCUGU--AGUUGa-UGaa--AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 81538 | 0.76 | 0.750725 |
Target: 5'- cGGCCcauCGGGCcggCAGCUACggcUCGCg -3' miRNA: 3'- aCCGGu--GCCUGua-GUUGAUGaa-AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 2516 | 0.75 | 0.780263 |
Target: 5'- cGGCCGCGGcggcgGCGUCGGCgggGCggggggCGCg -3' miRNA: 3'- aCCGGUGCC-----UGUAGUUGa--UGaaa---GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 66781 | 0.75 | 0.808505 |
Target: 5'- gGGCCGCGGAaucggaGUCGGCcgACgcgCGCg -3' miRNA: 3'- aCCGGUGCCUg-----UAGUUGa-UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 36044 | 0.74 | 0.81488 |
Target: 5'- gUGGCgGCGGugGUCGgcgugcugccggagGCUGCgggCGCg -3' miRNA: 3'- -ACCGgUGCCugUAGU--------------UGAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 144596 | 0.74 | 0.826483 |
Target: 5'- gUGGCgAgGGGCuUCGACUGCgagcUCGCu -3' miRNA: 3'- -ACCGgUgCCUGuAGUUGAUGaa--AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 39495 | 0.74 | 0.835189 |
Target: 5'- gUGGCCGCGGGCccccggagacGUCgAGCUGCUccccucCGCg -3' miRNA: 3'- -ACCGGUGCCUG----------UAG-UUGAUGAaa----GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 113319 | 0.74 | 0.835189 |
Target: 5'- gUGGCCGCGGGCAUguAUUACgggUGg -3' miRNA: 3'- -ACCGGUGCCUGUAguUGAUGaaaGCg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 120285 | 0.74 | 0.843695 |
Target: 5'- aUGGCCACGGccgaGUCcuGGCUGCUgUUGCc -3' miRNA: 3'- -ACCGGUGCCug--UAG--UUGAUGAaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 141726 | 0.73 | 0.875561 |
Target: 5'- cUGGCCAUGGcCAUCAACgccgACUacgGCa -3' miRNA: 3'- -ACCGGUGCCuGUAGUUGa---UGAaagCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 128586 | 0.72 | 0.903667 |
Target: 5'- gGGCCgcgcggacGCGGGCGUCAACgACga-CGCc -3' miRNA: 3'- aCCGG--------UGCCUGUAGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 71435 | 0.72 | 0.924387 |
Target: 5'- cGGCCACGGGC-UCAGCgagauccaGCa -3' miRNA: 3'- aCCGGUGCCUGuAGUUGaugaaag-CG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 122145 | 0.71 | 0.933104 |
Target: 5'- gGGCCGCGGGCGaggacguccUCAACgACg--UGCu -3' miRNA: 3'- aCCGGUGCCUGU---------AGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 26491 | 0.71 | 0.937716 |
Target: 5'- cGGCCGCGGGCcgCGcggggacGgUGCUggcCGCg -3' miRNA: 3'- aCCGGUGCCUGuaGU-------UgAUGAaa-GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 27256 | 0.71 | 0.938216 |
Target: 5'- cGGCCGCgGGACcgCAGCcccgugGCg--CGCg -3' miRNA: 3'- aCCGGUG-CCUGuaGUUGa-----UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 134681 | 0.71 | 0.94307 |
Target: 5'- gGGUCACGGcGCGgguGCUGCUgccgCGCg -3' miRNA: 3'- aCCGGUGCC-UGUaguUGAUGAaa--GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 53245 | 0.71 | 0.94307 |
Target: 5'- cGGCCGUGGGCGUC--CUGCggcagCGCg -3' miRNA: 3'- aCCGGUGCCUGUAGuuGAUGaaa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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