miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 117631 1.12 0.007314
Target:  5'- gUGGCCACGGACAUCAACUACUUUCGCc -3'
miRNA:   3'- -ACCGGUGCCUGUAGUUGAUGAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 45007 0.77 0.678333
Target:  5'- aGGCCcugGCGGugGUCAAUgcGCUUUUGCc -3'
miRNA:   3'- aCCGG---UGCCugUAGUUGa-UGAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 111815 0.76 0.730451
Target:  5'- cGGUCGCGGGCGUCcAGggGCUggCGCg -3'
miRNA:   3'- aCCGGUGCCUGUAG-UUgaUGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 45277 0.76 0.74064
Target:  5'- gGGCCGCGGACAagUCGGCggACgugcUCGUc -3'
miRNA:   3'- aCCGGUGCCUGU--AGUUGa-UGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 81538 0.76 0.750725
Target:  5'- cGGCCcauCGGGCcggCAGCUACggcUCGCg -3'
miRNA:   3'- aCCGGu--GCCUGua-GUUGAUGaa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 2516 0.75 0.780263
Target:  5'- cGGCCGCGGcggcgGCGUCGGCgggGCggggggCGCg -3'
miRNA:   3'- aCCGGUGCC-----UGUAGUUGa--UGaaa---GCG- -5'
5156 5' -49.9 NC_001798.1 + 66781 0.75 0.808505
Target:  5'- gGGCCGCGGAaucggaGUCGGCcgACgcgCGCg -3'
miRNA:   3'- aCCGGUGCCUg-----UAGUUGa-UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 36044 0.74 0.81488
Target:  5'- gUGGCgGCGGugGUCGgcgugcugccggagGCUGCgggCGCg -3'
miRNA:   3'- -ACCGgUGCCugUAGU--------------UGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 144596 0.74 0.826483
Target:  5'- gUGGCgAgGGGCuUCGACUGCgagcUCGCu -3'
miRNA:   3'- -ACCGgUgCCUGuAGUUGAUGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 39495 0.74 0.835189
Target:  5'- gUGGCCGCGGGCccccggagacGUCgAGCUGCUccccucCGCg -3'
miRNA:   3'- -ACCGGUGCCUG----------UAG-UUGAUGAaa----GCG- -5'
5156 5' -49.9 NC_001798.1 + 113319 0.74 0.835189
Target:  5'- gUGGCCGCGGGCAUguAUUACgggUGg -3'
miRNA:   3'- -ACCGGUGCCUGUAguUGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 120285 0.74 0.843695
Target:  5'- aUGGCCACGGccgaGUCcuGGCUGCUgUUGCc -3'
miRNA:   3'- -ACCGGUGCCug--UAG--UUGAUGAaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 141726 0.73 0.875561
Target:  5'- cUGGCCAUGGcCAUCAACgccgACUacgGCa -3'
miRNA:   3'- -ACCGGUGCCuGUAGUUGa---UGAaagCG- -5'
5156 5' -49.9 NC_001798.1 + 128586 0.72 0.903667
Target:  5'- gGGCCgcgcggacGCGGGCGUCAACgACga-CGCc -3'
miRNA:   3'- aCCGG--------UGCCUGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 71435 0.72 0.924387
Target:  5'- cGGCCACGGGC-UCAGCgagauccaGCa -3'
miRNA:   3'- aCCGGUGCCUGuAGUUGaugaaag-CG- -5'
5156 5' -49.9 NC_001798.1 + 122145 0.71 0.933104
Target:  5'- gGGCCGCGGGCGaggacguccUCAACgACg--UGCu -3'
miRNA:   3'- aCCGGUGCCUGU---------AGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 26491 0.71 0.937716
Target:  5'- cGGCCGCGGGCcgCGcggggacGgUGCUggcCGCg -3'
miRNA:   3'- aCCGGUGCCUGuaGU-------UgAUGAaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 27256 0.71 0.938216
Target:  5'- cGGCCGCgGGACcgCAGCcccgugGCg--CGCg -3'
miRNA:   3'- aCCGGUG-CCUGuaGUUGa-----UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 134681 0.71 0.94307
Target:  5'- gGGUCACGGcGCGgguGCUGCUgccgCGCg -3'
miRNA:   3'- aCCGGUGCC-UGUaguUGAUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 53245 0.71 0.94307
Target:  5'- cGGCCGUGGGCGUC--CUGCggcagCGCg -3'
miRNA:   3'- aCCGGUGCCUGUAGuuGAUGaaa--GCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.