miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 2516 0.75 0.780263
Target:  5'- cGGCCGCGGcggcgGCGUCGGCgggGCggggggCGCg -3'
miRNA:   3'- aCCGGUGCC-----UGUAGUUGa--UGaaa---GCG- -5'
5156 5' -49.9 NC_001798.1 + 2569 0.66 0.995574
Target:  5'- cGGCCGCGGggcgggggGCGUCcGCgcgGCUcuucUUCGg -3'
miRNA:   3'- aCCGGUGCC--------UGUAGuUGa--UGA----AAGCg -5'
5156 5' -49.9 NC_001798.1 + 4465 0.7 0.966957
Target:  5'- cGGaCCGCGGACGUCGuCUcCggUcCGCg -3'
miRNA:   3'- aCC-GGUGCCUGUAGUuGAuGaaA-GCG- -5'
5156 5' -49.9 NC_001798.1 + 12260 0.68 0.986421
Target:  5'- gGGCCGCGGACGaccaGGCcGgUggCGCa -3'
miRNA:   3'- aCCGGUGCCUGUag--UUGaUgAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 17969 0.66 0.997294
Target:  5'- aGGUC-CGGACGUCGggggggGCUGCg--CGg -3'
miRNA:   3'- aCCGGuGCCUGUAGU------UGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 24167 0.71 0.947669
Target:  5'- aUGGCgGCGGGCcgcuUCGGCUGgggcCUggCGCa -3'
miRNA:   3'- -ACCGgUGCCUGu---AGUUGAU----GAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 24215 0.67 0.990809
Target:  5'- gUGGCCAUGaGCcgCcGCUACgaccgCGCg -3'
miRNA:   3'- -ACCGGUGCcUGuaGuUGAUGaaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 25703 0.66 0.997726
Target:  5'- cGGCCGCcuGGGCGggCAACUggACcggCGCc -3'
miRNA:   3'- aCCGGUG--CCUGUa-GUUGA--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 25752 0.66 0.997726
Target:  5'- gGGCgCGCaGGGCGUgCuGCUGCUguccaCGCg -3'
miRNA:   3'- aCCG-GUG-CCUGUA-GuUGAUGAaa---GCG- -5'
5156 5' -49.9 NC_001798.1 + 26376 0.66 0.996226
Target:  5'- gGGCCGCGG-CGggaguuCUGCg--CGCg -3'
miRNA:   3'- aCCGGUGCCuGUaguu--GAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 26491 0.71 0.937716
Target:  5'- cGGCCGCGGGCcgCGcggggacGgUGCUggcCGCg -3'
miRNA:   3'- aCCGGUGCCUGuaGU-------UgAUGAaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 27256 0.71 0.938216
Target:  5'- cGGCCGCgGGACcgCAGCcccgugGCg--CGCg -3'
miRNA:   3'- aCCGGUG-CCUGuaGUUGa-----UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 28594 0.67 0.994834
Target:  5'- gUGGCCugGGAgA-CGGCcGCg--CGCc -3'
miRNA:   3'- -ACCGGugCCUgUaGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 32038 0.69 0.975754
Target:  5'- cGGCCACGGGCcgCucGCcccgGCgucCGCg -3'
miRNA:   3'- aCCGGUGCCUGuaGu-UGa---UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 34309 0.66 0.997726
Target:  5'- uUGGCuCGCGGGCGgugCGGCUGaccugccugccCUUUCu- -3'
miRNA:   3'- -ACCG-GUGCCUGUa--GUUGAU-----------GAAAGcg -5'
5156 5' -49.9 NC_001798.1 + 35599 0.67 0.993051
Target:  5'- cGGCCGCGGGCucCGGggGCUc-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuaGUUgaUGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 36044 0.74 0.81488
Target:  5'- gUGGCgGCGGugGUCGgcgugcugccggagGCUGCgggCGCg -3'
miRNA:   3'- -ACCGgUGCCugUAGU--------------UGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 39495 0.74 0.835189
Target:  5'- gUGGCCGCGGGCccccggagacGUCgAGCUGCUccccucCGCg -3'
miRNA:   3'- -ACCGGUGCCUG----------UAG-UUGAUGAaa----GCG- -5'
5156 5' -49.9 NC_001798.1 + 39823 0.67 0.994834
Target:  5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3'
miRNA:   3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 41875 0.68 0.989492
Target:  5'- cGGCCGgGGA--UCAGCUGCa---GCa -3'
miRNA:   3'- aCCGGUgCCUguAGUUGAUGaaagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.