miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 117631 1.12 0.007314
Target:  5'- gUGGCCACGGACAUCAACUACUUUCGCc -3'
miRNA:   3'- -ACCGGUGCCUGUAGUUGAUGAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 133077 0.66 0.996797
Target:  5'- cGGCCgcacGCGGuuCAUCuaccugguGCUGCUggaggccugucUUCGCg -3'
miRNA:   3'- aCCGG----UGCCu-GUAGu-------UGAUGA-----------AAGCG- -5'
5156 5' -49.9 NC_001798.1 + 113658 0.66 0.996797
Target:  5'- gUGGCgGCGG-CG--GACUGCUUUgcCGCc -3'
miRNA:   3'- -ACCGgUGCCuGUagUUGAUGAAA--GCG- -5'
5156 5' -49.9 NC_001798.1 + 103851 0.66 0.996226
Target:  5'- aGGCCACGGACAgguACUGg------ -3'
miRNA:   3'- aCCGGUGCCUGUaguUGAUgaaagcg -5'
5156 5' -49.9 NC_001798.1 + 71969 0.66 0.996226
Target:  5'- cUGGCCcUGGugGUCGGggACg--CGCu -3'
miRNA:   3'- -ACCGGuGCCugUAGUUgaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 26376 0.66 0.996226
Target:  5'- gGGCCGCGG-CGggaguuCUGCg--CGCg -3'
miRNA:   3'- aCCGGUGCCuGUaguu--GAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 48337 0.66 0.996226
Target:  5'- cGGCgCA-GGACGUCGAC-GCgacCGCg -3'
miRNA:   3'- aCCG-GUgCCUGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 43264 0.66 0.995574
Target:  5'- -cGCCGgGGGCGUCGugcccuGCUGCUccgUgGCg -3'
miRNA:   3'- acCGGUgCCUGUAGU------UGAUGAa--AgCG- -5'
5156 5' -49.9 NC_001798.1 + 132296 0.66 0.995574
Target:  5'- cGGCaguuUACGGACcgCGuGCUGCUgcuccacUCGCu -3'
miRNA:   3'- aCCG----GUGCCUGuaGU-UGAUGAa------AGCG- -5'
5156 5' -49.9 NC_001798.1 + 137985 0.66 0.996797
Target:  5'- -cGCCugGGcgcGCcgCAGCUcGCggUCGCg -3'
miRNA:   3'- acCGGugCC---UGuaGUUGA-UGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 17969 0.66 0.997294
Target:  5'- aGGUC-CGGACGUCGggggggGCUGCg--CGg -3'
miRNA:   3'- aCCGGuGCCUGUAGU------UGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 64863 0.66 0.997294
Target:  5'- cGGCC-CGGACAU--GCUGCgcuuaaagUgGCu -3'
miRNA:   3'- aCCGGuGCCUGUAguUGAUGaa------AgCG- -5'
5156 5' -49.9 NC_001798.1 + 83661 0.66 0.997726
Target:  5'- cGGCuCGCGGGCGUCugggauGC-ACUggCGg -3'
miRNA:   3'- aCCG-GUGCCUGUAGu-----UGaUGAaaGCg -5'
5156 5' -49.9 NC_001798.1 + 80684 0.66 0.997726
Target:  5'- cUGGCCGCGGuGCuccUCGGC-GCgcccgUCGUg -3'
miRNA:   3'- -ACCGGUGCC-UGu--AGUUGaUGaa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 34309 0.66 0.997726
Target:  5'- uUGGCuCGCGGGCGgugCGGCUGaccugccugccCUUUCu- -3'
miRNA:   3'- -ACCG-GUGCCUGUa--GUUGAU-----------GAAAGcg -5'
5156 5' -49.9 NC_001798.1 + 25752 0.66 0.997726
Target:  5'- gGGCgCGCaGGGCGUgCuGCUGCUguccaCGCg -3'
miRNA:   3'- aCCG-GUG-CCUGUA-GuUGAUGAaa---GCG- -5'
5156 5' -49.9 NC_001798.1 + 25703 0.66 0.997726
Target:  5'- cGGCCGCcuGGGCGggCAACUggACcggCGCc -3'
miRNA:   3'- aCCGGUG--CCUGUa-GUUGA--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 44326 0.66 0.997603
Target:  5'- aUGGCCACGGugAgagccaugaugaugUUAGCguggagCGCa -3'
miRNA:   3'- -ACCGGUGCCugU--------------AGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 139065 0.66 0.997294
Target:  5'- aGGCCGCGGGCcaccACgugGCgg-CGCc -3'
miRNA:   3'- aCCGGUGCCUGuaguUGa--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 66894 0.66 0.997294
Target:  5'- aGGCCACGGGgG-CGGg-GCcgUCGCu -3'
miRNA:   3'- aCCGGUGCCUgUaGUUgaUGaaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.