Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5156 | 5' | -49.9 | NC_001798.1 | + | 43264 | 0.66 | 0.995574 |
Target: 5'- -cGCCGgGGGCGUCGugcccuGCUGCUccgUgGCg -3' miRNA: 3'- acCGGUgCCUGUAGU------UGAUGAa--AgCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 136587 | 0.66 | 0.995362 |
Target: 5'- aGGCCACacaguccgugcgggGGACGggcccgggCAACUGCaa-CGCa -3' miRNA: 3'- aCCGGUG--------------CCUGUa-------GUUGAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 92272 | 0.67 | 0.995141 |
Target: 5'- aUGGCCGCGccUGUCcggccgaaggccuggAGCUGCUgUCGCu -3' miRNA: 3'- -ACCGGUGCcuGUAG---------------UUGAUGAaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 28594 | 0.67 | 0.994834 |
Target: 5'- gUGGCCugGGAgA-CGGCcGCg--CGCc -3' miRNA: 3'- -ACCGGugCCUgUaGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 39823 | 0.67 | 0.994834 |
Target: 5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3' miRNA: 3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 43037 | 0.67 | 0.994834 |
Target: 5'- gGGCCcCGGGCG-CAAaUGCgg-CGCg -3' miRNA: 3'- aCCGGuGCCUGUaGUUgAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 92400 | 0.67 | 0.994834 |
Target: 5'- gUGGCCGCGGuCGUCGGgU-Cc--CGCa -3' miRNA: 3'- -ACCGGUGCCuGUAGUUgAuGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 102742 | 0.67 | 0.994834 |
Target: 5'- -cGCgCACGGACggCGAcCUGCgg-CGCg -3' miRNA: 3'- acCG-GUGCCUGuaGUU-GAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 71603 | 0.67 | 0.993996 |
Target: 5'- cGGCCuguCGGGCGgcguccUCAGCcagacGCUggCGCg -3' miRNA: 3'- aCCGGu--GCCUGU------AGUUGa----UGAaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 122475 | 0.67 | 0.993996 |
Target: 5'- cGGCC-CaGACGgc-GCUGCUgcgUCGCu -3' miRNA: 3'- aCCGGuGcCUGUaguUGAUGAa--AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 149954 | 0.67 | 0.993996 |
Target: 5'- cGGCCugGGACGacggaGACgccgACgggggCGCg -3' miRNA: 3'- aCCGGugCCUGUag---UUGa---UGaaa--GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 97643 | 0.67 | 0.993996 |
Target: 5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3' miRNA: 3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 35599 | 0.67 | 0.993051 |
Target: 5'- cGGCCGCGGGCucCGGggGCUc-CGCa -3' miRNA: 3'- aCCGGUGCCUGuaGUUgaUGAaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 104729 | 0.67 | 0.993051 |
Target: 5'- cGGUacuGCGGGCGUCcGCU-CUcgUCGCc -3' miRNA: 3'- aCCGg--UGCCUGUAGuUGAuGAa-AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 68990 | 0.67 | 0.993051 |
Target: 5'- gGGCC-CGGACcgccUCGGCgGCg-UCGCg -3' miRNA: 3'- aCCGGuGCCUGu---AGUUGaUGaaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 76195 | 0.67 | 0.991992 |
Target: 5'- cGGCCGCGGuCGUgcccauggucCAGUUGCUggaaUCGCu -3' miRNA: 3'- aCCGGUGCCuGUA----------GUUGAUGAa---AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 92330 | 0.67 | 0.991992 |
Target: 5'- cGGCgaCGCGGACGUCGcCg----UCGCg -3' miRNA: 3'- aCCG--GUGCCUGUAGUuGaugaaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 24215 | 0.67 | 0.990809 |
Target: 5'- gUGGCCAUGaGCcgCcGCUACgaccgCGCg -3' miRNA: 3'- -ACCGGUGCcUGuaGuUGAUGaaa--GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 138115 | 0.68 | 0.990035 |
Target: 5'- uUGaCCACGGcCGUCugaaacgccuggcgaAGCUGCUgcggUCGCg -3' miRNA: 3'- -ACcGGUGCCuGUAG---------------UUGAUGAa---AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 118927 | 0.68 | 0.989492 |
Target: 5'- aGGCgACGGACGUgCGcCUGgagUCGCu -3' miRNA: 3'- aCCGgUGCCUGUA-GUuGAUgaaAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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