miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 52282 0.67 0.897183
Target:  5'- -cCCGCG-UUUGCGGaCGugGAGCAgGa -3'
miRNA:   3'- ucGGCGCuAAGUGCC-GUugCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 109552 0.67 0.897183
Target:  5'- -cCCGCGGccuauggCGCGGUGGCcccGAGCGCGg -3'
miRNA:   3'- ucGGCGCUaa-----GUGCCGUUG---CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 88682 0.67 0.890553
Target:  5'- cGGCCGUGAggcCGCGGCAcaaaACGAaaAUGg -3'
miRNA:   3'- -UCGGCGCUaa-GUGCCGU----UGCUcgUGC- -5'
5157 3' -55.4 NC_001798.1 + 132656 0.67 0.890553
Target:  5'- uGCCGcCGGUUCAaagGGCGcuGCGAcgcgucGCACGc -3'
miRNA:   3'- uCGGC-GCUAAGUg--CCGU--UGCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 43682 0.67 0.897183
Target:  5'- gGGUCGUGGguggUCACGGCccggagauGCGuggccaGGCGCGg -3'
miRNA:   3'- -UCGGCGCUa---AGUGCCGu-------UGC------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 53103 0.67 0.897183
Target:  5'- cGCCGgGcg-CGCGGCG-CGAGCucccuGCGg -3'
miRNA:   3'- uCGGCgCuaaGUGCCGUuGCUCG-----UGC- -5'
5157 3' -55.4 NC_001798.1 + 143766 0.67 0.897183
Target:  5'- gGGCCugaucGCG-UUCugGGCAugG-GCGCc -3'
miRNA:   3'- -UCGG-----CGCuAAGugCCGUugCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 8544 0.67 0.897183
Target:  5'- cGGaCGUGggUCGCGGCGAgGGGUggggGCGa -3'
miRNA:   3'- -UCgGCGCuaAGUGCCGUUgCUCG----UGC- -5'
5157 3' -55.4 NC_001798.1 + 72427 0.68 0.859505
Target:  5'- cGCCGCcuucuuugagugccGGUUCGaGaGCGACGGGCACc -3'
miRNA:   3'- uCGGCG--------------CUAAGUgC-CGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 1644 0.68 0.861037
Target:  5'- cGGCgGCGcgUCGgGGUAcaggcgcGCGuGCGCGg -3'
miRNA:   3'- -UCGgCGCuaAGUgCCGU-------UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2760 0.68 0.861037
Target:  5'- aGGuCCGCGGcg-GCGGCGGCGgcggagcucagcaGGCGCGg -3'
miRNA:   3'- -UC-GGCGCUaagUGCCGUUGC-------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 30891 0.68 0.8618
Target:  5'- uGGCC-CGg--CACGGaCGACGAGgACGa -3'
miRNA:   3'- -UCGGcGCuaaGUGCC-GUUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 106108 0.68 0.8618
Target:  5'- cGCCGCGAccgccgggUCuGCGGUuccGGCG-GCACGg -3'
miRNA:   3'- uCGGCGCUa-------AG-UGCCG---UUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 149973 0.68 0.864831
Target:  5'- cGCCGaCGGgggCGCGGCGcccgcggacgccgggGCGAGCGg- -3'
miRNA:   3'- uCGGC-GCUaa-GUGCCGU---------------UGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 89399 0.68 0.868572
Target:  5'- cGGCCGCuccccuuccccccGAggCACGGC--CGGGCGCu -3'
miRNA:   3'- -UCGGCG-------------CUaaGUGCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 15375 0.68 0.869314
Target:  5'- cGGCCGUGgg-CGCGGCGGa-GGCGCc -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUgcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 24700 0.68 0.869314
Target:  5'- cGCCGCGcccccgCGCccggGGCccGCGGGCGCGg -3'
miRNA:   3'- uCGGCGCuaa---GUG----CCGu-UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 79864 0.68 0.869314
Target:  5'- cGCCuCGAUggaCGCGGCGGcCGAGCuguACGu -3'
miRNA:   3'- uCGGcGCUAa--GUGCCGUU-GCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 97228 0.68 0.869314
Target:  5'- uGGCCGUGGagcuggcgcugUUCG-GGCGGCGGGCGg- -3'
miRNA:   3'- -UCGGCGCU-----------AAGUgCCGUUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 27241 0.68 0.857192
Target:  5'- cGGCCGCGGgggagGCGGCcGCGggaccgcagccccguGGCGCGc -3'
miRNA:   3'- -UCGGCGCUaag--UGCCGuUGC---------------UCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.