miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 145799 0.74 0.545844
Target:  5'- gAGCgCGCGG---GCGGCAgaaacGCGGGCGCGg -3'
miRNA:   3'- -UCG-GCGCUaagUGCCGU-----UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 24782 0.74 0.545844
Target:  5'- gAGCUGCGGUUCGUGcGCGACGcGCugGu -3'
miRNA:   3'- -UCGGCGCUAAGUGC-CGUUGCuCGugC- -5'
5157 3' -55.4 NC_001798.1 + 29634 0.73 0.596375
Target:  5'- gGGCCGC-AUUCGCaccccGGCAcuGCGAGCgACGg -3'
miRNA:   3'- -UCGGCGcUAAGUG-----CCGU--UGCUCG-UGC- -5'
5157 3' -55.4 NC_001798.1 + 117569 0.73 0.565923
Target:  5'- uGCCGCGGcgCGcCGGCAugGAcCACGg -3'
miRNA:   3'- uCGGCGCUaaGU-GCCGUugCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 23687 0.73 0.568953
Target:  5'- cGGCCGCGAcgccacgggccgcUUCACGGCcgggcggccccggcgGGuCGAGCugGa -3'
miRNA:   3'- -UCGGCGCU-------------AAGUGCCG---------------UU-GCUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 8803 0.73 0.576036
Target:  5'- aGGCCGCGGgguaaaGCGGCAcCGAcGCGCu -3'
miRNA:   3'- -UCGGCGCUaag---UGCCGUuGCU-CGUGc -5'
5157 3' -55.4 NC_001798.1 + 36045 0.72 0.664932
Target:  5'- uGGCgGCGGUgguCGGCGugcugccggaggcuGCGGGCGCGg -3'
miRNA:   3'- -UCGgCGCUAaguGCCGU--------------UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 43099 0.72 0.656759
Target:  5'- cGCCGCGuccgcgacCACGGUcgcuuccGGCGGGCGCGc -3'
miRNA:   3'- uCGGCGCuaa-----GUGCCG-------UUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 18406 0.72 0.667992
Target:  5'- uGCCGCGucgCGCGuGCcaaccAACGAGCACc -3'
miRNA:   3'- uCGGCGCuaaGUGC-CG-----UUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 82174 0.72 0.667992
Target:  5'- cGGCCGCGGUUUccgccgcaGCGGCGGC-AGUGCc -3'
miRNA:   3'- -UCGGCGCUAAG--------UGCCGUUGcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 69949 0.72 0.667992
Target:  5'- cGCCGCGccUUCGCGGCGuacuuGCGA-CACGc -3'
miRNA:   3'- uCGGCGCu-AAGUGCCGU-----UGCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 22740 0.72 0.667992
Target:  5'- gGGCCGCGGggccgaggUCGCgauGGCGgACGAGgACGg -3'
miRNA:   3'- -UCGGCGCUa-------AGUG---CCGU-UGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 52335 0.72 0.657782
Target:  5'- cAGCCcCGGggUCGUGGCGGcCGAGCACGa -3'
miRNA:   3'- -UCGGcGCUa-AGUGCCGUU-GCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 53245 0.72 0.637308
Target:  5'- cGGCCGUGGgcgUCcuGCGGCAGCGcGC-CGa -3'
miRNA:   3'- -UCGGCGCUa--AG--UGCCGUUGCuCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 2203 0.72 0.657782
Target:  5'- aGGCCGCcg--CGCGGCGcaGCGGGCcCGa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--UGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 142177 0.72 0.627061
Target:  5'- cGCgCGCGGUUCugacGCGGgGuCGAGCGCGc -3'
miRNA:   3'- uCG-GCGCUAAG----UGCCgUuGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 68116 0.72 0.627061
Target:  5'- gGGCCGCG---CACGGCcaagacGGCGAGgGCGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCG------UUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 105419 0.72 0.647551
Target:  5'- cGGCCGCGGUgcgCugGGCcuGC-AGCACu -3'
miRNA:   3'- -UCGGCGCUAa--GugCCGu-UGcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 24553 0.72 0.637308
Target:  5'- cGCCgGCGGUggUgGCGGCGGCcGGCGCGc -3'
miRNA:   3'- uCGG-CGCUA--AgUGCCGUUGcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 150392 0.71 0.722398
Target:  5'- cGGCCGCGuccgcgcUCgcagacaccacggggGCGGCGGCG-GCGCGg -3'
miRNA:   3'- -UCGGCGCua-----AG---------------UGCCGUUGCuCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.