miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 117376 0.71 0.698412
Target:  5'- -aCCGCcg-UCGCGGCcACGGGCACc -3'
miRNA:   3'- ucGGCGcuaAGUGCCGuUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 150392 0.71 0.722398
Target:  5'- cGGCCGCGuccgcgcUCgcagacaccacggggGCGGCGGCG-GCGCGg -3'
miRNA:   3'- -UCGGCGCua-----AG---------------UGCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 59677 0.71 0.688316
Target:  5'- cGGCuCGCG--UgGgGGCGGCGGGCACGc -3'
miRNA:   3'- -UCG-GCGCuaAgUgCCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 36298 0.71 0.718428
Target:  5'- uGCCGUGGgugUgGCGGCG--GGGCGCGg -3'
miRNA:   3'- uCGGCGCUa--AgUGCCGUugCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 88854 0.71 0.718428
Target:  5'- cGGCCGaUGGUcgUCACGGUGGCGGcCACGu -3'
miRNA:   3'- -UCGGC-GCUA--AGUGCCGUUGCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 150180 0.71 0.698412
Target:  5'- cGCCGCccccucCGCGGCGugGGGgGCGg -3'
miRNA:   3'- uCGGCGcuaa--GUGCCGUugCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 78819 0.71 0.698412
Target:  5'- cGCCGCc---CGCGGCGACGgccccggccccuGGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 55854 0.71 0.698412
Target:  5'- cAGCCGCuGUcgCACGGCGagaguccccACGAGgACGa -3'
miRNA:   3'- -UCGGCGcUAa-GUGCCGU---------UGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 2671 0.71 0.708452
Target:  5'- -cCCGCGg--CGCGGaGGCGGGCGCGg -3'
miRNA:   3'- ucGGCGCuaaGUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 149240 0.7 0.72833
Target:  5'- uGGcCCGCGGgggcgUCGcCGGCcggcGCGGGCGCGc -3'
miRNA:   3'- -UC-GGCGCUa----AGU-GCCGu---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3240 0.7 0.738148
Target:  5'- gGGCgGCGAgcaccccCGCGGCGccguagccgGCGGGCACc -3'
miRNA:   3'- -UCGgCGCUaa-----GUGCCGU---------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 86894 0.7 0.738148
Target:  5'- cGCCGgGAacCcCGGCGugGAGCGCc -3'
miRNA:   3'- uCGGCgCUaaGuGCCGUugCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 24294 0.7 0.747874
Target:  5'- uGGCgCGCGAgaaCGCGGCGcugACcgGGGCGCGa -3'
miRNA:   3'- -UCG-GCGCUaa-GUGCCGU---UG--CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 36911 0.7 0.747874
Target:  5'- gAGCCGCGAauccccaCAUGGCGuuGgGGGCugGg -3'
miRNA:   3'- -UCGGCGCUaa-----GUGCCGU--UgCUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 150348 0.7 0.753661
Target:  5'- gGGCgCGCGGUgcgcguccaccggCACGGCGgGCG-GCGCGg -3'
miRNA:   3'- -UCG-GCGCUAa------------GUGCCGU-UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 55894 0.7 0.757498
Target:  5'- gGGUa-CGAgaaccaaCGCGGCGACGAGCGCa -3'
miRNA:   3'- -UCGgcGCUaa-----GUGCCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 27482 0.7 0.76701
Target:  5'- uGCCGC-----GCGGgGGCGGGCGCGg -3'
miRNA:   3'- uCGGCGcuaagUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3195 0.7 0.76701
Target:  5'- cGGCCcCGGccggCGCGGaGGCGGGCGCGg -3'
miRNA:   3'- -UCGGcGCUaa--GUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 26367 0.7 0.76701
Target:  5'- gAGCUGCGcgggcCGCGGCGggaguucugcgcGCGGGCGCu -3'
miRNA:   3'- -UCGGCGCuaa--GUGCCGU------------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 86855 0.7 0.76701
Target:  5'- cGGCCGCGAcaagaCcCGGCGGCGGucGCGCu -3'
miRNA:   3'- -UCGGCGCUaa---GuGCCGUUGCU--CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.