miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 86855 0.7 0.76701
Target:  5'- cGGCCGCGAcaagaCcCGGCGGCGGucGCGCu -3'
miRNA:   3'- -UCGGCGCUaa---GuGCCGUUGCU--CGUGc -5'
5157 3' -55.4 NC_001798.1 + 97455 0.7 0.76701
Target:  5'- cGCCGCGugcuggCGCGGCugggggccGGCG-GCGCGa -3'
miRNA:   3'- uCGGCGCuaa---GUGCCG--------UUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 153803 0.7 0.76701
Target:  5'- cGGCgGCGGggggCagGCGGCGGCaGGCGCGg -3'
miRNA:   3'- -UCGgCGCUaa--G--UGCCGUUGcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 121626 0.7 0.776403
Target:  5'- --aCGCGAUaCGCGGcCGACGGcGCGCGc -3'
miRNA:   3'- ucgGCGCUAaGUGCC-GUUGCU-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 86121 0.7 0.780124
Target:  5'- cGCCGCGc--CGCGGuCAGCGAGUccugggaagcgcaccGCGg -3'
miRNA:   3'- uCGGCGCuaaGUGCC-GUUGCUCG---------------UGC- -5'
5157 3' -55.4 NC_001798.1 + 36510 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 36131 0.69 0.817805
Target:  5'- cGCCGCGAUcccgccgguggggCGCGGCGGCGGuCGgGg -3'
miRNA:   3'- uCGGCGCUAa------------GUGCCGUUGCUcGUgC- -5'
5157 3' -55.4 NC_001798.1 + 66781 0.69 0.81259
Target:  5'- gGGCCGCGGaaUCGgaguCGGcCGACGcGCGCGg -3'
miRNA:   3'- -UCGGCGCUa-AGU----GCC-GUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3412 0.69 0.81259
Target:  5'- cGCCGCGuucUCGCGcGCcAGCagGGGCGCGu -3'
miRNA:   3'- uCGGCGCua-AGUGC-CG-UUG--CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 79059 0.69 0.81259
Target:  5'- gGGCUGCGGgccCAgcCGGCcuACGAGCGCc -3'
miRNA:   3'- -UCGGCGCUaa-GU--GCCGu-UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 55989 0.69 0.81259
Target:  5'- aGGCCGCGGg----GGCGAgGGGCugGu -3'
miRNA:   3'- -UCGGCGCUaagugCCGUUgCUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 53919 0.69 0.81259
Target:  5'- uGGaCCGCGGgcccaGCGGCAccACGGGCuCGa -3'
miRNA:   3'- -UC-GGCGCUaag--UGCCGU--UGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 52607 0.69 0.81259
Target:  5'- uGGCCGCGuUUgACGGCGggucgACGgcccccgaggugGGCACGu -3'
miRNA:   3'- -UCGGCGCuAAgUGCCGU-----UGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 6039 0.69 0.811716
Target:  5'- gGGCCacaGCGAgaCAgagacgcCGGCGGCGAGCGgGg -3'
miRNA:   3'- -UCGG---CGCUaaGU-------GCCGUUGCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 139938 0.69 0.803769
Target:  5'- gGGCCcugGCGGcgCACGGgGGCGAagacGCGCGa -3'
miRNA:   3'- -UCGG---CGCUaaGUGCCgUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 102554 0.69 0.794791
Target:  5'- cGCaCGCGGUcaGCGGCGggugGCGgGGCGCGg -3'
miRNA:   3'- uCG-GCGCUAagUGCCGU----UGC-UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 36552 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 95674 0.69 0.785666
Target:  5'- -uCgGCGGUUUggcgGCGGCGGCGGGgGCGg -3'
miRNA:   3'- ucGgCGCUAAG----UGCCGUUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 36594 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 70284 0.69 0.794791
Target:  5'- cGCCGC----CACGGCGGCGuuucuguugucgGGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.