miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 102554 0.69 0.794791
Target:  5'- cGCaCGCGGUcaGCGGCGggugGCGgGGCGCGg -3'
miRNA:   3'- uCG-GCGCUAagUGCCGU----UGC-UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 36594 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 2569 0.69 0.792069
Target:  5'- cGGCCGCGGggcggggggcguccgCGCGGCucuucuucGGgGGGCGCGg -3'
miRNA:   3'- -UCGGCGCUaa-------------GUGCCG--------UUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 77206 0.69 0.785666
Target:  5'- cGCgGCGAcgguggaCGCGGCcguGCGGGCGCa -3'
miRNA:   3'- uCGgCGCUaa-----GUGCCGu--UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 70284 0.69 0.794791
Target:  5'- cGCCGC----CACGGCGGCGuuucuguugucgGGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 59 0.68 0.854079
Target:  5'- gGGgCGCGAaggCgggcgGCGGCGGCGGGCggGCGg -3'
miRNA:   3'- -UCgGCGCUaa-G-----UGCCGUUGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 2760 0.68 0.861037
Target:  5'- aGGuCCGCGGcg-GCGGCGGCGgcggagcucagcaGGCGCGg -3'
miRNA:   3'- -UC-GGCGCUaagUGCCGUUGC-------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1644 0.68 0.861037
Target:  5'- cGGCgGCGcgUCGgGGUAcaggcgcGCGuGCGCGg -3'
miRNA:   3'- -UCGgCGCuaAGUgCCGU-------UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 72427 0.68 0.859505
Target:  5'- cGCCGCcuucuuugagugccGGUUCGaGaGCGACGGGCACc -3'
miRNA:   3'- uCGGCG--------------CUAAGUgC-CGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 27241 0.68 0.857192
Target:  5'- cGGCCGCGGgggagGCGGCcGCGggaccgcagccccguGGCGCGc -3'
miRNA:   3'- -UCGGCGCUaag--UGCCGuUGC---------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1533 0.68 0.846156
Target:  5'- cGCCGgGAg-CACGGCGcgGCGGuacucGCGCGg -3'
miRNA:   3'- uCGGCgCUaaGUGCCGU--UGCU-----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 9661 0.68 0.854079
Target:  5'- gGGCCGCG---CGCGGa---GGGCGCGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCguugCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 154397 0.68 0.854079
Target:  5'- gGGgCGCGAaggCgggcgGCGGCGGCGGGCggGCGg -3'
miRNA:   3'- -UCgGCGCUaa-G-----UGCCGUUGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 23908 0.68 0.829733
Target:  5'- gGGCC-CGGUUCGaGGCcuCGGGCGCc -3'
miRNA:   3'- -UCGGcGCUAAGUgCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 54669 0.68 0.829733
Target:  5'- cAGCCGCGGcgcgcccgcUCGCGGCuc--AGCGCGa -3'
miRNA:   3'- -UCGGCGCUa--------AGUGCCGuugcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 133904 0.68 0.838039
Target:  5'- gGGCCGCGcucGUUCgauacACGGCAAccccCGGGCGuCGu -3'
miRNA:   3'- -UCGGCGC---UAAG-----UGCCGUU----GCUCGU-GC- -5'
5157 3' -55.4 NC_001798.1 + 26019 0.68 0.854079
Target:  5'- gGGCCGgGGgucUUCGCGcGCGugGAggccgcGCACGc -3'
miRNA:   3'- -UCGGCgCU---AAGUGC-CGUugCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1813 0.68 0.846156
Target:  5'- uGCCGCGAgacCACGGgcccguCGGCGGGCcaguccGCGg -3'
miRNA:   3'- uCGGCGCUaa-GUGCC------GUUGCUCG------UGC- -5'
5157 3' -55.4 NC_001798.1 + 67137 0.68 0.846156
Target:  5'- cGCCGCcccuggCAUcGCGACGGGCGCa -3'
miRNA:   3'- uCGGCGcuaa--GUGcCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 69478 0.68 0.846156
Target:  5'- gGGCCGU----CGCGGCGagcgauggGCGGGCGCa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--------UGCUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.