miRNA display CGI


Results 101 - 120 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 67137 0.68 0.846156
Target:  5'- cGCCGCcccuggCAUcGCGACGGGCGCa -3'
miRNA:   3'- uCGGCGcuaa--GUGcCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 1813 0.68 0.846156
Target:  5'- uGCCGCGAgacCACGGgcccguCGGCGGGCcaguccGCGg -3'
miRNA:   3'- uCGGCGCUaa-GUGCC------GUUGCUCG------UGC- -5'
5157 3' -55.4 NC_001798.1 + 1533 0.68 0.846156
Target:  5'- cGCCGgGAg-CACGGCGcgGCGGuacucGCGCGg -3'
miRNA:   3'- uCGGCgCUaaGUGCCGU--UGCU-----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 133904 0.68 0.838039
Target:  5'- gGGCCGCGcucGUUCgauacACGGCAAccccCGGGCGuCGu -3'
miRNA:   3'- -UCGGCGC---UAAG-----UGCCGUU----GCUCGU-GC- -5'
5157 3' -55.4 NC_001798.1 + 26019 0.68 0.854079
Target:  5'- gGGCCGgGGgucUUCGCGcGCGugGAggccgcGCACGc -3'
miRNA:   3'- -UCGGCgCU---AAGUGC-CGUugCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 23908 0.68 0.829733
Target:  5'- gGGCC-CGGUUCGaGGCcuCGGGCGCc -3'
miRNA:   3'- -UCGGcGCUAAGUgCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 154397 0.68 0.854079
Target:  5'- gGGgCGCGAaggCgggcgGCGGCGGCGGGCggGCGg -3'
miRNA:   3'- -UCgGCGCUaa-G-----UGCCGUUGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 9661 0.68 0.854079
Target:  5'- gGGCCGCG---CGCGGa---GGGCGCGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCguugCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 27241 0.68 0.857192
Target:  5'- cGGCCGCGGgggagGCGGCcGCGggaccgcagccccguGGCGCGc -3'
miRNA:   3'- -UCGGCGCUaag--UGCCGuUGC---------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 154125 0.67 0.883695
Target:  5'- cGGCgGCGGggacCcCGGCGGCGGGaCAUGg -3'
miRNA:   3'- -UCGgCGCUaa--GuGCCGUUGCUC-GUGC- -5'
5157 3' -55.4 NC_001798.1 + 90880 0.67 0.890553
Target:  5'- cGCuCGUGGagCugGGCGGCGcGCAUGc -3'
miRNA:   3'- uCG-GCGCUaaGugCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 98578 0.67 0.890553
Target:  5'- uGGCCGCGGUggCGuCGGCGGCcccGGCGg- -3'
miRNA:   3'- -UCGGCGCUAa-GU-GCCGUUGc--UCGUgc -5'
5157 3' -55.4 NC_001798.1 + 3321 0.67 0.890553
Target:  5'- gGGCgGCG----GCGGCGGCGGGCuucccGCGg -3'
miRNA:   3'- -UCGgCGCuaagUGCCGUUGCUCG-----UGC- -5'
5157 3' -55.4 NC_001798.1 + 118617 0.67 0.883695
Target:  5'- uGCCGCGg--CGCuGCAGCG-GUGCGa -3'
miRNA:   3'- uCGGCGCuaaGUGcCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 102384 0.67 0.883695
Target:  5'- cGCCugGCGGUcgGCGGCGAUGgcccccaccAGCGCGg -3'
miRNA:   3'- uCGG--CGCUAagUGCCGUUGC---------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 51885 0.67 0.883695
Target:  5'- cGGCCGagcucCACGGCAguucGCGAGCcucACGg -3'
miRNA:   3'- -UCGGCgcuaaGUGCCGU----UGCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 4839 0.67 0.883695
Target:  5'- gGGCCGCGcggCGgGGCGACG-GUcCGg -3'
miRNA:   3'- -UCGGCGCuaaGUgCCGUUGCuCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 52879 0.67 0.882997
Target:  5'- gGGCCGCGggUC-CGcGCGugGAcaucaugGCGCa -3'
miRNA:   3'- -UCGGCGCuaAGuGC-CGUugCU-------CGUGc -5'
5157 3' -55.4 NC_001798.1 + 130682 0.67 0.877332
Target:  5'- gGGCgGCGAUcguguucaacgagacCGCGGCGGCGGccguGCACa -3'
miRNA:   3'- -UCGgCGCUAa--------------GUGCCGUUGCU----CGUGc -5'
5157 3' -55.4 NC_001798.1 + 48155 0.67 0.876614
Target:  5'- cGCCGCGGUcgggCGCcuGGCGGCcacGCACGc -3'
miRNA:   3'- uCGGCGCUAa---GUG--CCGUUGcu-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.