Results 61 - 80 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5157 | 3' | -55.4 | NC_001798.1 | + | 26367 | 0.7 | 0.76701 |
Target: 5'- gAGCUGCGcgggcCGCGGCGggaguucugcgcGCGGGCGCu -3' miRNA: 3'- -UCGGCGCuaa--GUGCCGU------------UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 153803 | 0.7 | 0.76701 |
Target: 5'- cGGCgGCGGggggCagGCGGCGGCaGGCGCGg -3' miRNA: 3'- -UCGgCGCUaa--G--UGCCGUUGcUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 97455 | 0.7 | 0.76701 |
Target: 5'- cGCCGCGugcuggCGCGGCugggggccGGCG-GCGCGa -3' miRNA: 3'- uCGGCGCuaa---GUGCCG--------UUGCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 121626 | 0.7 | 0.776403 |
Target: 5'- --aCGCGAUaCGCGGcCGACGGcGCGCGc -3' miRNA: 3'- ucgGCGCUAaGUGCC-GUUGCU-CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 86121 | 0.7 | 0.780124 |
Target: 5'- cGCCGCGc--CGCGGuCAGCGAGUccugggaagcgcaccGCGg -3' miRNA: 3'- uCGGCGCuaaGUGCC-GUUGCUCG---------------UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 54388 | 0.69 | 0.785666 |
Target: 5'- gGGCCGCGg--CGCGGuCGGCGGGaGCu -3' miRNA: 3'- -UCGGCGCuaaGUGCC-GUUGCUCgUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36552 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36510 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 77206 | 0.69 | 0.785666 |
Target: 5'- cGCgGCGAcgguggaCGCGGCcguGCGGGCGCa -3' miRNA: 3'- uCGgCGCUaa-----GUGCCGu--UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 95674 | 0.69 | 0.785666 |
Target: 5'- -uCgGCGGUUUggcgGCGGCGGCGGGgGCGg -3' miRNA: 3'- ucGgCGCUAAG----UGCCGUUGCUCgUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36594 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 2569 | 0.69 | 0.792069 |
Target: 5'- cGGCCGCGGggcggggggcguccgCGCGGCucuucuucGGgGGGCGCGg -3' miRNA: 3'- -UCGGCGCUaa-------------GUGCCG--------UUgCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 72840 | 0.69 | 0.794791 |
Target: 5'- aGGCCGCacg-CGCGGC-ACGGGCcccgaGCGg -3' miRNA: 3'- -UCGGCGcuaaGUGCCGuUGCUCG-----UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 70284 | 0.69 | 0.794791 |
Target: 5'- cGCCGC----CACGGCGGCGuuucuguugucgGGCGCGg -3' miRNA: 3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 58687 | 0.69 | 0.794791 |
Target: 5'- cGCCGCcg-UCAgGGCcGCGgcGGCGCGg -3' miRNA: 3'- uCGGCGcuaAGUgCCGuUGC--UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 102554 | 0.69 | 0.794791 |
Target: 5'- cGCaCGCGGUcaGCGGCGggugGCGgGGCGCGg -3' miRNA: 3'- uCG-GCGCUAagUGCCGU----UGC-UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 139938 | 0.69 | 0.803769 |
Target: 5'- gGGCCcugGCGGcgCACGGgGGCGAagacGCGCGa -3' miRNA: 3'- -UCGG---CGCUaaGUGCCgUUGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 6039 | 0.69 | 0.811716 |
Target: 5'- gGGCCacaGCGAgaCAgagacgcCGGCGGCGAGCGgGg -3' miRNA: 3'- -UCGG---CGCUaaGU-------GCCGUUGCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 3412 | 0.69 | 0.81259 |
Target: 5'- cGCCGCGuucUCGCGcGCcAGCagGGGCGCGu -3' miRNA: 3'- uCGGCGCua-AGUGC-CG-UUG--CUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 55989 | 0.69 | 0.81259 |
Target: 5'- aGGCCGCGGg----GGCGAgGGGCugGu -3' miRNA: 3'- -UCGGCGCUaagugCCGUUgCUCGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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