miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 130682 0.67 0.877332
Target:  5'- gGGCgGCGAUcguguucaacgagacCGCGGCGGCGGccguGCACa -3'
miRNA:   3'- -UCGgCGCUAa--------------GUGCCGUUGCU----CGUGc -5'
5157 3' -55.4 NC_001798.1 + 70564 0.67 0.876614
Target:  5'- gGGCUGCGcacCACGGCGGCccugGGGC-CGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUG----CUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 1363 0.67 0.876614
Target:  5'- gGGCCGCcgcgCACGGCGucGCGccccAGCGCc -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--UGC----UCGUGc -5'
5157 3' -55.4 NC_001798.1 + 2235 0.67 0.876614
Target:  5'- cGCaGCGGgccgaaGGCGGCGGGCGCGc -3'
miRNA:   3'- uCGgCGCUaagug-CCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 25595 0.67 0.876614
Target:  5'- uGGCCGCGGgccgCGcCGGgGGCGGGCc-- -3'
miRNA:   3'- -UCGGCGCUaa--GU-GCCgUUGCUCGugc -5'
5157 3' -55.4 NC_001798.1 + 26091 0.67 0.876614
Target:  5'- uGCCGCGGggccaacgUGCGGUAccGCGuGCGCa -3'
miRNA:   3'- uCGGCGCUaa------GUGCCGU--UGCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 48155 0.67 0.876614
Target:  5'- cGCCGCGGUcgggCGCcuGGCGGCcacGCACGc -3'
miRNA:   3'- uCGGCGCUAa---GUG--CCGUUGcu-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 153228 0.67 0.875893
Target:  5'- cGGCC-CGGgccCGCGGCGGCGGaggacccGCGCGc -3'
miRNA:   3'- -UCGGcGCUaa-GUGCCGUUGCU-------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 23519 0.68 0.87226
Target:  5'- cGCCGCGGgcgggacccucggCGCGGaCGACGAGgagGCGg -3'
miRNA:   3'- uCGGCGCUaa-----------GUGCC-GUUGCUCg--UGC- -5'
5157 3' -55.4 NC_001798.1 + 15375 0.68 0.869314
Target:  5'- cGGCCGUGgg-CGCGGCGGa-GGCGCc -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUgcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 24700 0.68 0.869314
Target:  5'- cGCCGCGcccccgCGCccggGGCccGCGGGCGCGg -3'
miRNA:   3'- uCGGCGCuaa---GUG----CCGu-UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 79864 0.68 0.869314
Target:  5'- cGCCuCGAUggaCGCGGCGGcCGAGCuguACGu -3'
miRNA:   3'- uCGGcGCUAa--GUGCCGUU-GCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 97228 0.68 0.869314
Target:  5'- uGGCCGUGGagcuggcgcugUUCG-GGCGGCGGGCGg- -3'
miRNA:   3'- -UCGGCGCU-----------AAGUgCCGUUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 89399 0.68 0.868572
Target:  5'- cGGCCGCuccccuuccccccGAggCACGGC--CGGGCGCu -3'
miRNA:   3'- -UCGGCG-------------CUaaGUGCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 149973 0.68 0.864831
Target:  5'- cGCCGaCGGgggCGCGGCGcccgcggacgccgggGCGAGCGg- -3'
miRNA:   3'- uCGGC-GCUaa-GUGCCGU---------------UGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 30891 0.68 0.8618
Target:  5'- uGGCC-CGg--CACGGaCGACGAGgACGa -3'
miRNA:   3'- -UCGGcGCuaaGUGCC-GUUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 106108 0.68 0.8618
Target:  5'- cGCCGCGAccgccgggUCuGCGGUuccGGCG-GCACGg -3'
miRNA:   3'- uCGGCGCUa-------AG-UGCCG---UUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2760 0.68 0.861037
Target:  5'- aGGuCCGCGGcg-GCGGCGGCGgcggagcucagcaGGCGCGg -3'
miRNA:   3'- -UC-GGCGCUaagUGCCGUUGC-------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1644 0.68 0.861037
Target:  5'- cGGCgGCGcgUCGgGGUAcaggcgcGCGuGCGCGg -3'
miRNA:   3'- -UCGgCGCuaAGUgCCGU-------UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 72427 0.68 0.859505
Target:  5'- cGCCGCcuucuuugagugccGGUUCGaGaGCGACGGGCACc -3'
miRNA:   3'- uCGGCG--------------CUAAGUgC-CGUUGCUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.