miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 25595 0.67 0.876614
Target:  5'- uGGCCGCGGgccgCGcCGGgGGCGGGCc-- -3'
miRNA:   3'- -UCGGCGCUaa--GU-GCCgUUGCUCGugc -5'
5157 3' -55.4 NC_001798.1 + 26019 0.68 0.854079
Target:  5'- gGGCCGgGGgucUUCGCGcGCGugGAggccgcGCACGc -3'
miRNA:   3'- -UCGGCgCU---AAGUGC-CGUugCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 26091 0.67 0.876614
Target:  5'- uGCCGCGGggccaacgUGCGGUAccGCGuGCGCa -3'
miRNA:   3'- uCGGCGCUaa------GUGCCGU--UGCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 26367 0.7 0.76701
Target:  5'- gAGCUGCGcgggcCGCGGCGggaguucugcgcGCGGGCGCu -3'
miRNA:   3'- -UCGGCGCuaa--GUGCCGU------------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 26491 0.76 0.440664
Target:  5'- cGGCCGCGGgccgCGCGGgGACGGuGCugGc -3'
miRNA:   3'- -UCGGCGCUaa--GUGCCgUUGCU-CGugC- -5'
5157 3' -55.4 NC_001798.1 + 27170 0.77 0.363756
Target:  5'- uGCUGCGAgcUCGgGGCcGCGGGCGCGg -3'
miRNA:   3'- uCGGCGCUa-AGUgCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 27241 0.68 0.857192
Target:  5'- cGGCCGCGGgggagGCGGCcGCGggaccgcagccccguGGCGCGc -3'
miRNA:   3'- -UCGGCGCUaag--UGCCGuUGC---------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 27482 0.7 0.76701
Target:  5'- uGCCGC-----GCGGgGGCGGGCGCGg -3'
miRNA:   3'- uCGGCGcuaagUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 28252 0.66 0.921364
Target:  5'- cGCCGCcgc-CGC-GCAAgGAGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGcCGUUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 28672 0.66 0.915674
Target:  5'- cGCCGCG--UgGCGGCGGcCGAG-GCGg -3'
miRNA:   3'- uCGGCGCuaAgUGCCGUU-GCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 29634 0.73 0.596375
Target:  5'- gGGCCGC-AUUCGCaccccGGCAcuGCGAGCgACGg -3'
miRNA:   3'- -UCGGCGcUAAGUG-----CCGU--UGCUCG-UGC- -5'
5157 3' -55.4 NC_001798.1 + 29819 0.66 0.932024
Target:  5'- cGGCCGC----CGCGGCAGacccccGGCACGg -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGUUgc----UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 29896 0.66 0.915674
Target:  5'- cGGCUGCGGguuggggguggUCGCgGGCggUGGGCuCGg -3'
miRNA:   3'- -UCGGCGCUa----------AGUG-CCGuuGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 30891 0.68 0.8618
Target:  5'- uGGCC-CGg--CACGGaCGACGAGgACGa -3'
miRNA:   3'- -UCGGcGCuaaGUGCC-GUUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 30922 0.66 0.934042
Target:  5'- uGGCCGaCGGUgaggGCGGCGggggucgggcgggggGCGGGCGgGg -3'
miRNA:   3'- -UCGGC-GCUAag--UGCCGU---------------UGCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 32045 0.66 0.932024
Target:  5'- gGGCCGC---UCGCcccGGCGuccGCGGGCGCc -3'
miRNA:   3'- -UCGGCGcuaAGUG---CCGU---UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 32568 0.66 0.936996
Target:  5'- uGCUGCGGgcCGCGGCccccgcGugGAGC-CGc -3'
miRNA:   3'- uCGGCGCUaaGUGCCG------UugCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 36045 0.72 0.664932
Target:  5'- uGGCgGCGGUgguCGGCGugcugccggaggcuGCGGGCGCGg -3'
miRNA:   3'- -UCGgCGCUAaguGCCGU--------------UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 36131 0.69 0.817805
Target:  5'- cGCCGCGAUcccgccgguggggCGCGGCGGCGGuCGgGg -3'
miRNA:   3'- uCGGCGCUAa------------GUGCCGUUGCUcGUgC- -5'
5157 3' -55.4 NC_001798.1 + 36298 0.71 0.718428
Target:  5'- uGCCGUGGgugUgGCGGCG--GGGCGCGg -3'
miRNA:   3'- uCGGCGCUa--AgUGCCGUugCUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.