miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 36510 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 36552 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 36594 0.69 0.785666
Target:  5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3'
miRNA:   3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 36911 0.7 0.747874
Target:  5'- gAGCCGCGAauccccaCAUGGCGuuGgGGGCugGg -3'
miRNA:   3'- -UCGGCGCUaa-----GUGCCGU--UgCUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 41328 0.66 0.932024
Target:  5'- gGGCCuccaaGCaGUUUACGGCcuCGuGCACGu -3'
miRNA:   3'- -UCGG-----CGcUAAGUGCCGuuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 42216 0.74 0.525998
Target:  5'- cGCCGCGGgucggcgugCGCGGCGACGAaCGCc -3'
miRNA:   3'- uCGGCGCUaa-------GUGCCGUUGCUcGUGc -5'
5157 3' -55.4 NC_001798.1 + 43099 0.72 0.656759
Target:  5'- cGCCGCGuccgcgacCACGGUcgcuuccGGCGGGCGCGc -3'
miRNA:   3'- uCGGCGCuaa-----GUGCCG-------UUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 43682 0.67 0.897183
Target:  5'- gGGUCGUGGguggUCACGGCccggagauGCGuggccaGGCGCGg -3'
miRNA:   3'- -UCGGCGCUa---AGUGCCGu-------UGC------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 47024 0.66 0.921364
Target:  5'- gAGCCGcCGAa-CGCGGCAG-GcGCACGc -3'
miRNA:   3'- -UCGGC-GCUaaGUGCCGUUgCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 47814 0.66 0.915674
Target:  5'- cGUCGCGGgcucUCACGGCccCGGccccGCGCGc -3'
miRNA:   3'- uCGGCGCUa---AGUGCCGuuGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 48155 0.67 0.876614
Target:  5'- cGCCGCGGUcgggCGCcuGGCGGCcacGCACGc -3'
miRNA:   3'- uCGGCGCUAa---GUG--CCGUUGcu-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 51885 0.67 0.883695
Target:  5'- cGGCCGagcucCACGGCAguucGCGAGCcucACGg -3'
miRNA:   3'- -UCGGCgcuaaGUGCCGU----UGCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 52282 0.67 0.897183
Target:  5'- -cCCGCG-UUUGCGGaCGugGAGCAgGa -3'
miRNA:   3'- ucGGCGCuAAGUGCC-GUugCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 52335 0.72 0.657782
Target:  5'- cAGCCcCGGggUCGUGGCGGcCGAGCACGa -3'
miRNA:   3'- -UCGGcGCUa-AGUGCCGUU-GCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 52607 0.69 0.81259
Target:  5'- uGGCCGCGuUUgACGGCGggucgACGgcccccgaggugGGCACGu -3'
miRNA:   3'- -UCGGCGCuAAgUGCCGU-----UGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 52879 0.67 0.882997
Target:  5'- gGGCCGCGggUC-CGcGCGugGAcaucaugGCGCa -3'
miRNA:   3'- -UCGGCGCuaAGuGC-CGUugCU-------CGUGc -5'
5157 3' -55.4 NC_001798.1 + 53103 0.67 0.897183
Target:  5'- cGCCGgGcg-CGCGGCG-CGAGCucccuGCGg -3'
miRNA:   3'- uCGGCgCuaaGUGCCGUuGCUCG-----UGC- -5'
5157 3' -55.4 NC_001798.1 + 53245 0.72 0.637308
Target:  5'- cGGCCGUGGgcgUCcuGCGGCAGCGcGC-CGa -3'
miRNA:   3'- -UCGGCGCUa--AG--UGCCGUUGCuCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 53633 0.67 0.906076
Target:  5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3'
miRNA:   3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 53919 0.69 0.81259
Target:  5'- uGGaCCGCGGgcccaGCGGCAccACGGGCuCGa -3'
miRNA:   3'- -UC-GGCGCUaag--UGCCGU--UGCUCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.