Results 81 - 100 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5157 | 3' | -55.4 | NC_001798.1 | + | 54388 | 0.69 | 0.785666 |
Target: 5'- gGGCCGCGg--CGCGGuCGGCGGGaGCu -3' miRNA: 3'- -UCGGCGCuaaGUGCC-GUUGCUCgUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 54669 | 0.68 | 0.829733 |
Target: 5'- cAGCCGCGGcgcgcccgcUCGCGGCuc--AGCGCGa -3' miRNA: 3'- -UCGGCGCUa--------AGUGCCGuugcUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 55854 | 0.71 | 0.698412 |
Target: 5'- cAGCCGCuGUcgCACGGCGagaguccccACGAGgACGa -3' miRNA: 3'- -UCGGCGcUAa-GUGCCGU---------UGCUCgUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 55894 | 0.7 | 0.757498 |
Target: 5'- gGGUa-CGAgaaccaaCGCGGCGACGAGCGCa -3' miRNA: 3'- -UCGgcGCUaa-----GUGCCGUUGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 55989 | 0.69 | 0.81259 |
Target: 5'- aGGCCGCGGg----GGCGAgGGGCugGu -3' miRNA: 3'- -UCGGCGCUaagugCCGUUgCUCGugC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 56125 | 0.66 | 0.936996 |
Target: 5'- gGGCCGagGAUUUucCGGUgggaaaAGCGAGUGCGg -3' miRNA: 3'- -UCGGCg-CUAAGu-GCCG------UUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 56800 | 0.67 | 0.902952 |
Target: 5'- cGGCCGCGGaggUCACGGUggaGACGguggaaaAGC-CGu -3' miRNA: 3'- -UCGGCGCUa--AGUGCCG---UUGC-------UCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 58392 | 0.77 | 0.393389 |
Target: 5'- gAGCCGCGucagacccucgCGCGGCGcaggcggccagcGCGAGCGCGc -3' miRNA: 3'- -UCGGCGCuaa--------GUGCCGU------------UGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 58687 | 0.69 | 0.794791 |
Target: 5'- cGCCGCcg-UCAgGGCcGCGgcGGCGCGg -3' miRNA: 3'- uCGGCGcuaAGUgCCGuUGC--UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 58846 | 0.71 | 0.678172 |
Target: 5'- cGCCGCG-UagGCGGCccCGAGCGCc -3' miRNA: 3'- uCGGCGCuAagUGCCGuuGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 59677 | 0.71 | 0.688316 |
Target: 5'- cGGCuCGCG--UgGgGGCGGCGGGCACGc -3' miRNA: 3'- -UCG-GCGCuaAgUgCCGUUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 60844 | 0.66 | 0.926814 |
Target: 5'- cGuCCGCucg-CGCGGCGACGGGauCGCGu -3' miRNA: 3'- uC-GGCGcuaaGUGCCGUUGCUC--GUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 64731 | 0.66 | 0.915674 |
Target: 5'- aGGCgGCGGUg---GGC-AUGAGCGCGa -3' miRNA: 3'- -UCGgCGCUAagugCCGuUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 66781 | 0.69 | 0.81259 |
Target: 5'- gGGCCGCGGaaUCGgaguCGGcCGACGcGCGCGg -3' miRNA: 3'- -UCGGCGCUa-AGU----GCC-GUUGCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 67137 | 0.68 | 0.846156 |
Target: 5'- cGCCGCcccuggCAUcGCGACGGGCGCa -3' miRNA: 3'- uCGGCGcuaa--GUGcCGUUGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 68116 | 0.72 | 0.627061 |
Target: 5'- gGGCCGCG---CACGGCcaagacGGCGAGgGCGg -3' miRNA: 3'- -UCGGCGCuaaGUGCCG------UUGCUCgUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 69478 | 0.68 | 0.846156 |
Target: 5'- gGGCCGU----CGCGGCGagcgauggGCGGGCGCa -3' miRNA: 3'- -UCGGCGcuaaGUGCCGU--------UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 69949 | 0.72 | 0.667992 |
Target: 5'- cGCCGCGccUUCGCGGCGuacuuGCGA-CACGc -3' miRNA: 3'- uCGGCGCu-AAGUGCCGU-----UGCUcGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 70284 | 0.69 | 0.794791 |
Target: 5'- cGCCGC----CACGGCGGCGuuucuguugucgGGCGCGg -3' miRNA: 3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 70564 | 0.67 | 0.876614 |
Target: 5'- gGGCUGCGcacCACGGCGGCccugGGGC-CGg -3' miRNA: 3'- -UCGGCGCuaaGUGCCGUUG----CUCGuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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