miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 133904 0.68 0.838039
Target:  5'- gGGCCGCGcucGUUCgauacACGGCAAccccCGGGCGuCGu -3'
miRNA:   3'- -UCGGCGC---UAAG-----UGCCGUU----GCUCGU-GC- -5'
5157 3' -55.4 NC_001798.1 + 132656 0.67 0.890553
Target:  5'- uGCCGcCGGUUCAaagGGCGcuGCGAcgcgucGCACGc -3'
miRNA:   3'- uCGGC-GCUAAGUg--CCGU--UGCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 130682 0.67 0.877332
Target:  5'- gGGCgGCGAUcguguucaacgagacCGCGGCGGCGGccguGCACa -3'
miRNA:   3'- -UCGgCGCUAa--------------GUGCCGUUGCU----CGUGc -5'
5157 3' -55.4 NC_001798.1 + 130397 0.75 0.48718
Target:  5'- cGGCCaugGCGAgggCaaagGCGGCGACGAGCGCc -3'
miRNA:   3'- -UCGG---CGCUaa-G----UGCCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 121626 0.7 0.776403
Target:  5'- --aCGCGAUaCGCGGcCGACGGcGCGCGc -3'
miRNA:   3'- ucgGCGCUAaGUGCC-GUUGCU-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 118617 0.67 0.883695
Target:  5'- uGCCGCGg--CGCuGCAGCG-GUGCGa -3'
miRNA:   3'- uCGGCGCuaaGUGcCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 117569 0.73 0.565923
Target:  5'- uGCCGCGGcgCGcCGGCAugGAcCACGg -3'
miRNA:   3'- uCGGCGCUaaGU-GCCGUugCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 117376 0.71 0.698412
Target:  5'- -aCCGCcg-UCGCGGCcACGGGCACc -3'
miRNA:   3'- ucGGCGcuaAGUGCCGuUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 117067 0.66 0.932024
Target:  5'- cAGcCCGUGGUgcagCACGcccGCGA-GAGCGCGg -3'
miRNA:   3'- -UC-GGCGCUAa---GUGC---CGUUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 116780 0.66 0.921364
Target:  5'- uGCUGUGcucCGCGGCGcccgacGCGGGCGCc -3'
miRNA:   3'- uCGGCGCuaaGUGCCGU------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 116342 0.66 0.932024
Target:  5'- gAGCC-CGucuaCGCGGCGGCGuGCaACGu -3'
miRNA:   3'- -UCGGcGCuaa-GUGCCGUUGCuCG-UGC- -5'
5157 3' -55.4 NC_001798.1 + 115950 1.08 0.003748
Target:  5'- aAGCCGCGAUUCACGGCAACGAGCACGu -3'
miRNA:   3'- -UCGGCGCUAAGUGCCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 113131 0.66 0.936996
Target:  5'- aGGCCGCGug---UGGCGGgGAGgACGg -3'
miRNA:   3'- -UCGGCGCuaaguGCCGUUgCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 109552 0.67 0.897183
Target:  5'- -cCCGCGGccuauggCGCGGUGGCcccGAGCGCGg -3'
miRNA:   3'- ucGGCGCUaa-----GUGCCGUUG---CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 106175 0.66 0.935529
Target:  5'- cGGCCGCGGUgauguugccggagaUCuuuuGCGG-GACGAGC-CGg -3'
miRNA:   3'- -UCGGCGCUA--------------AG----UGCCgUUGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 106108 0.68 0.8618
Target:  5'- cGCCGCGAccgccgggUCuGCGGUuccGGCG-GCACGg -3'
miRNA:   3'- uCGGCGCUa-------AG-UGCCG---UUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 105419 0.72 0.647551
Target:  5'- cGGCCGCGGUgcgCugGGCcuGC-AGCACu -3'
miRNA:   3'- -UCGGCGCUAa--GugCCGu-UGcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 104689 0.66 0.93844
Target:  5'- cGCCGCGAacugcgcUuugggcagcuugucgUCGCGGUAGCG-GUACu -3'
miRNA:   3'- uCGGCGCU-------A---------------AGUGCCGUUGCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 104501 0.78 0.3179
Target:  5'- uGGCCGCGugccaaaaaCGCGGCGGCG-GCGCGg -3'
miRNA:   3'- -UCGGCGCuaa------GUGCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 104419 0.66 0.921364
Target:  5'- gAGCCGcCGAagCACGGCca-GGGC-CGu -3'
miRNA:   3'- -UCGGC-GCUaaGUGCCGuugCUCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.